Variant report

Variant	rs35673246
Chromosome Location	chr17:37816702-37816703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr17:37816677-37816998	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr17:37815487..37818092-chr17:37864402..37866827,2	MCF-7	breast:
2	chr17:37814865..37817539-chr17:37818088..37820916,2	MCF-7	breast:
3	chr17:37792116..37794246-chr17:37816401..37819185,2	MCF-7	breast:

Variant related genes	Relation type
TCAP	TF binding region
ENSG00000141736	Chromatin interaction
ENSG00000173991	Chromatin interaction
ENSG00000131748	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16964868	1.00[AMR][1000 genomes]
rs3194794	1.00[AFR][1000 genomes]
rs34719599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36076022	0.90[AFR][1000 genomes]
rs60599834	1.00[AFR][1000 genomes]
rs71369778	0.82[AFR][1000 genomes]
rs71369782	0.93[AFR][1000 genomes]
rs71369784	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
2	esv1825702	chr17:37487168-37876767	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv833442	chr17:37692880-37861291	Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv908205	chr17:37709422-37830900	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv908206	chr17:37709422-37866005	Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv908207	chr17:37709422-37922259	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv833443	chr17:37725640-37882864	Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
8	nsv457738	chr17:37770005-37831035	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv574991	chr17:37770005-37831035	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv516757	chr17:37781849-37834541	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
11	esv1792029	chr17:37797757-37886460	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
12	nsv908213	chr17:37807698-37839493	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
13	nsv528093	chr17:37814080-37866005	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
14	nsv908214	chr17:37814224-37861833	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37795000-37823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr17:37795400-37818000	Weak transcription	Fetal Kidney	kidney
3	chr17:37799800-37819600	Weak transcription	Osteobl	bone
4	chr17:37800000-37818600	Weak transcription	Hela-S3	cervix
5	chr17:37800000-37820000	Weak transcription	NH-A	brain
6	chr17:37800200-37816800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr17:37801800-37817000	Weak transcription	A549	lung
8	chr17:37803800-37821800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr17:37808400-37819200	Weak transcription	Small Intestine	intestine
10	chr17:37809800-37819400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr17:37810000-37817200	Weak transcription	HSMM	muscle
12	chr17:37810000-37819400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr17:37810000-37819600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr17:37810000-37820000	Weak transcription	HSMMtube	muscle
15	chr17:37810000-37820400	Strong transcription	Brain Germinal Matrix	brain
16	chr17:37810200-37819800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr17:37810400-37817600	Weak transcription	Stomach Mucosa	stomach
18	chr17:37810400-37817800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr17:37810600-37818600	Strong transcription	Fetal Intestine Small	intestine
20	chr17:37810600-37819200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr17:37810600-37819200	Strong transcription	Fetal Intestine Large	intestine
22	chr17:37810600-37820000	Weak transcription	K562	blood
23	chr17:37810600-37821000	Weak transcription	Fetal Brain Male	brain
24	chr17:37810800-37819400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr17:37810800-37819600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr17:37810800-37820600	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr17:37811000-37818000	Strong transcription	Esophagus	oesophagus
28	chr17:37811000-37818600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr17:37811000-37818600	Strong transcription	Sigmoid Colon	Sigmoid Colon
30	chr17:37811400-37818600	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr17:37811800-37819400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr17:37811800-37820800	Strong transcription	Fetal Brain Female	brain
33	chr17:37812000-37817600	Strong transcription	Gastric	stomach
34	chr17:37812000-37819400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr17:37812000-37819600	Genic enhancers	Lung	lung
36	chr17:37812400-37818200	Genic enhancers	Primary T cells fromperipheralblood	blood
37	chr17:37812400-37819200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr17:37812400-37819600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr17:37812600-37816800	Strong transcription	Colonic Mucosa	Colon
40	chr17:37812600-37818000	Weak transcription	HMEC	breast
41	chr17:37812600-37818200	Genic enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr17:37812600-37818200	Strong transcription	Duodenum Mucosa	Duodenum
43	chr17:37812600-37819400	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr17:37812600-37819600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr17:37812800-37818000	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr17:37813000-37818000	Strong transcription	Ovary	ovary
47	chr17:37813000-37820800	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr17:37813400-37819400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr17:37813800-37816800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr17:37814000-37816800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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