Variant report

Variant	rs35673354
Chromosome Location	chr4:106392240-106392241
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:106066483..106069673-chr4:106390838..106393733,3	K562	blood:
2	chr4:106060523..106062575-chr4:106390965..106392720,2	K562	blood:
3	chr4:106065001..106068039-chr4:106390236..106392618,4	MCF-7	breast:
4	chr4:106391240..106392982-chr4:106630165..106631896,2	K562	blood:
5	chr4:106270792..106273529-chr4:106390596..106392898,2	K562	blood:
6	chr4:105848795..105851289-chr4:106392054..106394222,2	MCF-7	breast:
7	chr4:106066539..106069010-chr4:106392150..106395317,5	MCF-7	breast:
8	chr4:106373864..106376614-chr4:106391989..106394662,2	MCF-7	breast:
9	chr4:106046108..106050165-chr4:106391446..106394724,4	MCF-7	breast:
10	chr4:106060470..106063103-chr4:106391322..106393340,2	K562	blood:
11	chr4:106064984..106068563-chr4:106391196..106395238,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168769	Chromatin interaction
ENSG00000138785	Chromatin interaction
ENSG00000251259	Chromatin interaction
ENSG00000138777	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10470987	1.00[EUR][1000 genomes]
rs17035640	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17035675	1.00[EUR][1000 genomes]
rs6823261	1.00[EUR][1000 genomes]
rs7672469	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv830027	chr4:106222010-106406738	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1002228	chr4:106346206-106433381	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106347600-106392800	Weak transcription	Colonic Mucosa	Colon
2	chr4:106348200-106393000	Weak transcription	Thymus	Thymus
3	chr4:106355400-106393200	Weak transcription	Esophagus	oesophagus
4	chr4:106357200-106392600	Weak transcription	Brain Angular Gyrus	brain
5	chr4:106362200-106392600	Weak transcription	A549	lung
6	chr4:106364600-106392600	Weak transcription	Fetal Kidney	kidney
7	chr4:106366000-106392400	Weak transcription	Osteobl	bone
8	chr4:106366000-106392600	Weak transcription	Psoas Muscle	Psoas
9	chr4:106366600-106392600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:106366800-106393200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:106370000-106392600	Weak transcription	HUVEC	blood vessel
12	chr4:106373200-106392600	Weak transcription	NH-A	brain
13	chr4:106374000-106392400	Weak transcription	NHDF-Ad	bronchial
14	chr4:106374000-106393000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr4:106374600-106392400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:106374600-106392600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:106375400-106392600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr4:106375400-106393000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:106375400-106393000	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr4:106376800-106392600	Weak transcription	Fetal Lung	lung
21	chr4:106377000-106393000	Weak transcription	Right Atrium	heart
22	chr4:106377000-106393200	Weak transcription	Pancreas	Pancrea
23	chr4:106377000-106394000	Weak transcription	Gastric	stomach
24	chr4:106378000-106392400	Weak transcription	HSMM	muscle
25	chr4:106378000-106393000	Weak transcription	HSMMtube	muscle
26	chr4:106379200-106392600	Weak transcription	Aorta	Aorta
27	chr4:106381200-106394000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr4:106381600-106392600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr4:106382000-106392400	Weak transcription	Brain Substantia Nigra	brain
30	chr4:106382800-106392600	Weak transcription	Stomach Mucosa	stomach
31	chr4:106382800-106392800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr4:106383200-106392400	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:106383400-106392400	Weak transcription	Fetal Heart	heart
34	chr4:106383400-106393000	Weak transcription	Fetal Brain Female	brain
35	chr4:106385000-106394000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:106385200-106393400	Weak transcription	Brain Germinal Matrix	brain
37	chr4:106385400-106392400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:106386400-106394200	Weak transcription	Spleen	Spleen
39	chr4:106386600-106392600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr4:106388200-106392400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:106388200-106392400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr4:106388200-106392400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr4:106388200-106392600	Weak transcription	Adipose Nuclei	Adipose
44	chr4:106388200-106392800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:106388200-106392800	Weak transcription	Fetal Thymus	thymus
46	chr4:106388400-106393000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr4:106388400-106393200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr4:106388400-106393200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr4:106388400-106394000	Weak transcription	Lung	lung
50	chr4:106388600-106392400	Weak transcription	Rectal Mucosa Donor 31	rectum

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