Variant report

Variant	rs35676334
Chromosome Location	chr12:104851463-104851464
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:104850865..104852398-chr12:104863309..104864984,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10778335	0.82[EUR][1000 genomes]
rs10861220	0.84[EUR][1000 genomes]
rs12819044	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4964292	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832502	chr12:104833729-104908288	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104849600-104853200	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr12:104849600-104853200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr12:104849800-104851800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr12:104849800-104851800	Active TSS	Fetal Brain Female	brain
5	chr12:104849800-104852000	Active TSS	Brain Cingulate Gyrus	brain
6	chr12:104849800-104852000	Active TSS	Right Ventricle	heart
7	chr12:104849800-104852400	Active TSS	Brain Angular Gyrus	brain
8	chr12:104849800-104852600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr12:104849800-104852600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:104849800-104852600	Active TSS	HSMMtube	muscle
11	chr12:104849800-104852800	Active TSS	NHLF	lung
12	chr12:104849800-104853000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr12:104849800-104853400	Active TSS	Aorta	Aorta
14	chr12:104849800-104853600	Active TSS	Right Atrium	heart
15	chr12:104850000-104851800	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr12:104850000-104851800	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr12:104850000-104852000	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr12:104850000-104852000	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr12:104850000-104852000	Active TSS	Brain Substantia Nigra	brain
20	chr12:104850000-104852000	Bivalent/Poised TSS	HepG2	liver
21	chr12:104850000-104852000	Active TSS	HSMM	muscle
22	chr12:104850000-104852400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr12:104850000-104852600	Flanking Active TSS	Liver	Liver
24	chr12:104850000-104852800	Active TSS	Ovary	ovary
25	chr12:104850000-104853000	Active TSS	Left Ventricle	heart
26	chr12:104850000-104853400	Bivalent/Poised TSS	Fetal Intestine Large	intestine
27	chr12:104850000-104853400	Active TSS	Fetal Kidney	kidney
28	chr12:104850000-104853400	Active TSS	Gastric	stomach
29	chr12:104850000-104853400	Active TSS	Pancreas	Pancrea
30	chr12:104850000-104853600	Active TSS	NHDF-Ad	bronchial
31	chr12:104850000-104853800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr12:104850200-104851600	Active TSS	Placenta	Placenta
33	chr12:104850200-104851800	Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr12:104850200-104851800	Bivalent/Poised TSS	Stomach Mucosa	stomach
35	chr12:104850200-104852000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr12:104850200-104852000	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr12:104850200-104852000	Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr12:104850200-104852000	Active TSS	Primary T helper cells fromperipheralblood	blood
39	chr12:104850200-104852000	Active TSS	Muscle Satellite Cultured Cells	--
40	chr12:104850200-104852200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr12:104850200-104852200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr12:104850200-104852200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr12:104850200-104852200	Active TSS	Brain Hippocampus Middle	brain
44	chr12:104850200-104852200	Active TSS	Fetal Lung	lung
45	chr12:104850200-104852400	Active TSS	HUES6 Cell Line	embryonic stem cell
46	chr12:104850200-104852400	Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr12:104850200-104852400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr12:104850200-104852400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr12:104850200-104852400	Active TSS	Esophagus	oesophagus
50	chr12:104850200-104852600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links