Variant report

Variant	rs35681724
Chromosome Location	chr1:223064649-223064650
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:223062880..223064889-chr1:223066694..223069200,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12742619	0.91[EUR][1000 genomes]
rs17162913	0.92[EUR][1000 genomes]
rs17163533	0.91[EUR][1000 genomes]
rs34202956	0.89[EUR][1000 genomes]
rs34715037	0.89[EUR][1000 genomes]
rs35699059	0.92[EUR][1000 genomes]
rs36133935	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv873206	chr1:222985197-223124916	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223029800-223066800	Weak transcription	Primary B cells from cord blood	blood
2	chr1:223051600-223070600	Weak transcription	Small Intestine	intestine
3	chr1:223051800-223066000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:223051800-223070000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:223051800-223070000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:223052800-223065600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:223052800-223070200	Weak transcription	Colon Smooth Muscle	Colon
8	chr1:223054400-223066800	Weak transcription	Fetal Intestine Small	intestine
9	chr1:223055800-223082800	Weak transcription	Fetal Heart	heart
10	chr1:223056800-223066600	Weak transcription	Fetal Intestine Large	intestine
11	chr1:223057800-223068000	Weak transcription	Placenta	Placenta
12	chr1:223058200-223065400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:223060200-223071200	Weak transcription	Ovary	ovary
14	chr1:223060400-223064800	Weak transcription	HepG2	liver
15	chr1:223060400-223070000	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:223060600-223070000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr1:223060800-223070200	Weak transcription	Fetal Lung	lung
18	chr1:223062600-223066000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:223062800-223070200	Weak transcription	Adipose Nuclei	Adipose
20	chr1:223063000-223066800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:223063200-223065400	Weak transcription	NHEK	skin
22	chr1:223063200-223070400	Weak transcription	Primary T cells from cord blood	blood
23	chr1:223063400-223065000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr1:223063400-223066000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:223063600-223064800	Weak transcription	HUVEC	blood vessel
26	chr1:223063800-223068400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:223064400-223066600	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links