Variant report

Variant	rs35689614
Chromosome Location	chr4:175138571-175138572
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:175132325..175134757-chr4:175137089..175139873,3	K562	blood:
2	chr4:175137442..175140324-chr4:175142017..175143698,2	K562	blood:
3	chr4:175112932..175114755-chr4:175136391..175138788,2	K562	blood:
4	chr4:175132325..175133854-chr4:175137410..175139370,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10434410	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10520278	0.84[ASN][1000 genomes]
rs13122347	0.80[ASN][1000 genomes]
rs13137178	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1396193	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17060395	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17060404	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17060428	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17060454	0.83[ASN][1000 genomes]
rs35190385	0.83[ASN][1000 genomes]
rs35593724	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62335793	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62335798	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs66919862	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6840664	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7671444	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7673114	0.80[ASN][1000 genomes]
rs7696841	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs906569	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs906570	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs954927	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016910	chr4:174952788-175349057	Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537363	chr4:174952788-175349057	Active TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv881449	chr4:174984230-175225452	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv596234	chr4:175053051-175361437	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175137000-175138800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:175137200-175139200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
3	chr4:175137400-175138600	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:175137400-175138600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
5	chr4:175137400-175139600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:175137400-175139600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
7	chr4:175137600-175138600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr4:175137600-175138600	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
9	chr4:175137600-175138600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
10	chr4:175137600-175139200	Bivalent Enhancer	Fetal Thymus	thymus
11	chr4:175137600-175139400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:175137600-175139800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr4:175137800-175138600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:175137800-175138600	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr4:175137800-175138800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
16	chr4:175137800-175139400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
17	chr4:175137800-175139600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
18	chr4:175137800-175139600	Bivalent Enhancer	Stomach Mucosa	stomach
19	chr4:175137800-175139800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:175138000-175138600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr4:175138000-175138600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
22	chr4:175138000-175138600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr4:175138000-175138600	Bivalent Enhancer	Brain Substantia Nigra	brain
24	chr4:175138000-175138600	Bivalent Enhancer	Fetal Intestine Small	intestine
25	chr4:175138000-175138600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
26	chr4:175138000-175138800	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:175138000-175138800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:175138000-175139200	Bivalent Enhancer	Spleen	Spleen
29	chr4:175138000-175139400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
30	chr4:175138000-175139600	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:175138000-175139600	Bivalent Enhancer	Esophagus	oesophagus
32	chr4:175138000-175139800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
33	chr4:175138000-175139800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:175138200-175138600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:175138200-175138600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:175138200-175138600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:175138200-175138600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
38	chr4:175138200-175138600	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr4:175138200-175138600	Flanking Active TSS	Fetal Heart	heart
40	chr4:175138200-175138600	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum
41	chr4:175138200-175138800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
42	chr4:175138200-175138800	Flanking Active TSS	Right Atrium	heart
43	chr4:175138200-175139200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr4:175138200-175139200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
45	chr4:175138200-175139400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
46	chr4:175138200-175139400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
47	chr4:175138200-175139600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
48	chr4:175138200-175139600	Bivalent Enhancer	Brain Angular Gyrus	brain
49	chr4:175138200-175139600	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
50	chr4:175138200-175139800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach

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