Variant report

Variant	rs35694469
Chromosome Location	chr8:130256051-130256052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12546163	1.00[AFR][1000 genomes]
rs13255648	1.00[AFR][1000 genomes]
rs71522545	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831460	chr8:130185680-130366217	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130253800-130256800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr8:130254000-130282200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:130254200-130258400	Weak transcription	Fetal Stomach	stomach
4	chr8:130254200-130258600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:130254400-130258400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:130254400-130258800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:130254600-130266000	Weak transcription	Thymus	Thymus
8	chr8:130255600-130260800	Enhancers	Dnd41	blood
9	chr8:130255800-130257600	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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