Variant report

Variant	rs35698602
Chromosome Location	chr19:41882149-41882150
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:33)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:33 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr19:41882038-41882694	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr19:41881952-41883286	SK-N-MC	brain:	n/a	n/a
3	POLR2A	chr19:41882039-41882625	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr19:41882078-41882891	SK-N-MC	brain:	n/a	n/a
5	ZBTB33	chr19:41882131-41882661	A549	lung:	n/a	n/a
6	BCL3	chr19:41881874-41883724	A549	lung:	n/a	chr19:41882570-41882579
7	TCF12	chr19:41882120-41882643	A549	lung:	n/a	n/a
8	NR3C1	chr19:41881954-41882619	A549	lung:	n/a	n/a
9	PBX3	chr19:41882144-41883695	A549	lung:	n/a	n/a
10	ATF3	chr19:41881994-41882483	A549	lung:	n/a	n/a
11	NR3C1	chr19:41882025-41882910	A549	lung:	n/a	n/a
12	CEBPB	chr19:41882100-41882753	H1-hESC	embryonic stem cell:	n/a	n/a
13	MTA3	chr19:41882030-41883338	GM12878	blood:	n/a	n/a
14	POLR2A	chr19:41882141-41883069	GM12878	blood:	n/a	n/a
15	CEBPB	chr19:41882133-41882585	MCF-7	breast:	n/a	n/a
16	NR3C1	chr19:41881957-41882560	A549	lung:	n/a	n/a
17	POLR2A	chr19:41881878-41883460	HepG2	liver:	n/a	n/a
18	TCF12	chr19:41881959-41883493	A549	lung:	n/a	n/a
19	POLR2A	chr19:41882128-41882580	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr19:41882091-41882872	HepG2	liver:	n/a	n/a
21	FOXP2	chr19:41882136-41882523	SK-N-MC	brain:	n/a	n/a
22	FOSL2	chr19:41882043-41882969	HepG2	liver:	n/a	chr19:41882757-41882765 chr19:41882380-41882389
23	CEBPB	chr19:41882080-41882586	A549	lung:	n/a	n/a
24	FOXA1	chr19:41882103-41882468	A549	lung:	n/a	n/a
25	CEBPB	chr19:41882070-41882645	MCF-7	breast:	n/a	n/a
26	FOXA1	chr19:41882059-41882510	HepG2	liver:	n/a	n/a
27	BCL3	chr19:41881822-41883679	A549	lung:	n/a	chr19:41882570-41882579
28	SIN3AK20	chr19:41882005-41882520	A549	lung:	n/a	n/a
29	CEBPB	chr19:41882016-41882792	A549	lung:	n/a	n/a
30	CEBPB	chr19:41882149-41882560	A549	lung:	n/a	n/a
31	FOXA1	chr19:41882067-41882336	T-47D	breast:	n/a	n/a
32	FOXA1	chr19:41882054-41882369	T-47D	breast:	n/a	n/a
33	MAZ	chr19:41882045-41882907	IMR90	lung:	n/a	chr19:41882423-41882433

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:41880830..41883046-chr19:41887103..41889706,2	MCF-7	breast:
2	chr19:41882074..41885616-chr19:41888544..41893640,5	K562	blood:
3	chr19:41846876..41849699-chr19:41880679..41882557,2	K562	blood:
4	chr19:41869853..41871782-chr19:41881681..41884054,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000255730	TF binding region
BCKDHA	TF binding region
TMEM91	TF binding region
ENSG00000105329	Chromatin interaction
ENSG00000123810	Chromatin interaction
ENSG00000142046	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521311	chr19:41856886-41882712	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
2	esv996035	chr19:41881445-41887549	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:41871200-41882200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr19:41871200-41884000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr19:41871200-41888600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:41871400-41888400	Weak transcription	Dnd41	blood
5	chr19:41872600-41882200	Weak transcription	Fetal Thymus	thymus
6	chr19:41874200-41882200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr19:41874400-41882200	Weak transcription	Small Intestine	intestine
8	chr19:41874400-41882200	Weak transcription	HSMM	muscle
9	chr19:41875400-41882800	Weak transcription	K562	blood
10	chr19:41875400-41883000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr19:41879800-41882200	Enhancers	Brain Hippocampus Middle	brain
12	chr19:41880200-41882200	Weak transcription	Left Ventricle	heart
13	chr19:41880400-41894000	Weak transcription	HSMMtube	muscle
14	chr19:41880600-41882200	Enhancers	Ovary	ovary
15	chr19:41881200-41882200	Weak transcription	Brain Angular Gyrus	brain
16	chr19:41881400-41883000	Flanking Active TSS	Placenta	Placenta
17	chr19:41881600-41882200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr19:41881800-41882200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr19:41881800-41882200	Enhancers	Primary T cells fromperipheralblood	blood
20	chr19:41881800-41882200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr19:41881800-41882200	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr19:41881800-41882200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr19:41881800-41882200	Enhancers	Lung	lung
24	chr19:41881800-41883200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr19:41881800-41883400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr19:41882000-41882200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr19:41882000-41882200	Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr19:41882000-41882200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr19:41882000-41882200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr19:41882000-41882200	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr19:41882000-41882200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr19:41882000-41882200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr19:41882000-41882200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr19:41882000-41882200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr19:41882000-41882200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
36	chr19:41882000-41882200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr19:41882000-41882200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr19:41882000-41882200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
39	chr19:41882000-41882200	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr19:41882000-41882200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
41	chr19:41882000-41882200	Flanking Active TSS	Fetal Muscle Trunk	muscle
42	chr19:41882000-41882200	Enhancers	Gastric	stomach
43	chr19:41882000-41882200	Active TSS	Pancreas	Pancrea
44	chr19:41882000-41882200	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr19:41882000-41882200	Active TSS	Right Ventricle	heart
46	chr19:41882000-41882200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
47	chr19:41882000-41882200	Flanking Active TSS	Stomach Mucosa	stomach
48	chr19:41882000-41882200	Enhancers	Thymus	Thymus
49	chr19:41882000-41882200	Active TSS	GM12878-XiMat	blood
50	chr19:41882000-41882400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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