Variant report

Variant	rs35702577
Chromosome Location	chr17:45953990-45953991
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:45934921..45937833-chr17:45952289..45955225,2	MCF-7	breast:
2	chr17:45949402..45954335-chr17:45955513..45959303,4	K562	blood:
3	chr17:45927022..45929446-chr17:45953894..45957951,3	K562	blood:
4	chr17:45927189..45930455-chr17:45951774..45954492,3	MCF-7	breast:
5	chr17:45952890..45955536-chr17:45970845..45973792,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000264920	Chromatin interaction
ENSG00000189120	Chromatin interaction
ENSG00000167182	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12452082	0.81[AMR][1000 genomes]
rs12948368	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17617250	0.83[AMR][1000 genomes]
rs35004787	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35132293	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35480192	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35533494	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4793693	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4794225	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56119022	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62067368	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs66721410	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv908573	chr17:45858487-45956073	Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv518892	chr17:45887951-46029432	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45950000-45954600	Weak transcription	Lung	lung
2	chr17:45950400-45955400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr17:45950600-45954000	Enhancers	Placenta	Placenta
4	chr17:45950600-45955600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:45950800-45955200	Weak transcription	HSMM	muscle
6	chr17:45951000-45955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr17:45952600-45954800	Weak transcription	Fetal Lung	lung
8	chr17:45952600-45955600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr17:45953000-45954800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr17:45953000-45955200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr17:45953000-45955800	Weak transcription	HMEC	breast
12	chr17:45953000-45956000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr17:45953200-45954600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr17:45953200-45954600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr17:45953200-45955200	Weak transcription	HSMMtube	muscle
16	chr17:45953200-45955400	Weak transcription	Osteobl	bone
17	chr17:45953200-45955800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr17:45953400-45954400	Weak transcription	K562	blood
19	chr17:45953400-45954600	Weak transcription	Fetal Intestine Large	intestine
20	chr17:45953400-45954600	Weak transcription	Fetal Thymus	thymus
21	chr17:45953400-45954800	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr17:45953400-45954800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr17:45953400-45954800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr17:45953400-45955200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr17:45953400-45955400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr17:45953400-45955600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr17:45953600-45954800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr17:45953600-45955400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr17:45953600-45956200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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