Variant report

Variant	rs35702906
Chromosome Location	chr1:154473998-154473999
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:154473932-154474266	HUVEC	blood vessel:	n/a	n/a
2	CEBPB	chr1:154473971-154474633	A549	lung:	n/a	chr1:154474300-154474311
3	SUZ12	chr1:154473918-154474502	H1-hESC	embryonic stem cell:	n/a	n/a
4	ZNF263	chr1:154473858-154474121	HEK293-T-REx	kidney:	n/a	chr1:154473971-154473992
5	E2F6	chr1:154473973-154475840	H1-hESC	embryonic stem cell:	n/a	chr1:154475683-154475692 chr1:154474738-154474747 chr1:154475247-154475254 chr1:154474983-154474992 chr1:154475362-154475374 chr1:154475038-154475048
6	POLR2A	chr1:154473755-154475537	HUVEC	blood vessel:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154473384..154476326-chr1:154529885..154532539,2	MCF-7	breast:
2	chr1:154191216..154193063-chr1:154472171..154474701,2	K562	blood:

Variant related genes	Relation type
TDRD10	TF binding region
ENSG00000143569	Chromatin interaction
ENSG00000160714	Chromatin interaction
ENSG00000143612	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases
3	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	esv1815481	chr1:154465065-154475033	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3424713	chr1:154473153-154475701	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	esv3414034	chr1:154473478-154476776	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154471200-154474000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
2	chr1:154471200-154475400	Active TSS	Right Atrium	heart
3	chr1:154471800-154474200	Bivalent/Poised TSS	Psoas Muscle	Psoas
4	chr1:154472000-154475200	Bivalent/Poised TSS	Left Ventricle	heart
5	chr1:154472200-154475400	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
6	chr1:154472200-154475400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
7	chr1:154472400-154474000	Bivalent/Poised TSS	Brain Anterior Caudate	brain
8	chr1:154472400-154474000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
9	chr1:154472400-154474400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
10	chr1:154472400-154475400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
11	chr1:154472600-154474000	Bivalent/Poised TSS	Fetal Kidney	kidney
12	chr1:154472600-154474200	Bivalent/Poised TSS	Fetal Lung	lung
13	chr1:154472800-154474800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
14	chr1:154472800-154475200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:154472800-154475200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
16	chr1:154472800-154475200	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
17	chr1:154473000-154474000	Active TSS	Spleen	Spleen
18	chr1:154473000-154474200	Bivalent/Poised TSS	Fetal Thymus	thymus
19	chr1:154473000-154475000	Active TSS	Lung	lung
20	chr1:154473200-154474400	Flanking Active TSS	Liver	Liver
21	chr1:154473200-154475200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
22	chr1:154473200-154475200	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
23	chr1:154473200-154475600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
24	chr1:154473200-154475600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:154473400-154474800	Bivalent/Poised TSS	Aorta	Aorta
26	chr1:154473400-154475000	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
27	chr1:154473400-154475200	Active TSS	HUVEC	blood vessel
28	chr1:154473400-154475400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
29	chr1:154473600-154474000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr1:154473600-154474000	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
31	chr1:154473600-154474200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr1:154473800-154474000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
33	chr1:154473800-154474000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
34	chr1:154473800-154474000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
35	chr1:154473800-154474000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
36	chr1:154473800-154474000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr1:154473800-154474000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:154473800-154474000	Flanking Bivalent TSS/Enh	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr1:154473800-154474000	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
40	chr1:154473800-154474000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
41	chr1:154473800-154474000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
42	chr1:154473800-154474000	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr1:154473800-154474000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr1:154473800-154474000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr1:154473800-154474000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr1:154473800-154474000	Bivalent/Poised TSS	Esophagus	oesophagus
47	chr1:154473800-154474000	Bivalent Enhancer	Fetal Brain Male	brain
48	chr1:154473800-154474000	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
49	chr1:154473800-154474000	Flanking Bivalent TSS/Enh	Placenta	Placenta
50	chr1:154473800-154474000	Flanking Active TSS	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links