Variant report

Variant	rs35703720
Chromosome Location	chr8:10570051-10570052
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr8:10569987-10571453	MCF10A-Er-Src	breast:	n/a	chr8:10571288-10571299
2	STAT3	chr8:10569989-10571222	Hela-S3	cervix:	n/a	chr8:10570205-10570214
3	STAT3	chr8:10569994-10570524	MCF10A-Er-Src	breast:	n/a	chr8:10570205-10570214
4	MYC	chr8:10569960-10570242	MCF10A-Er-Src	breast:	n/a	n/a
5	SMARCC1	chr8:10569960-10571737	Hela-S3	cervix:	n/a	n/a
6	STAT3	chr8:10569954-10570159	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr8:10569995-10570416	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
RP1L1	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11984873	0.92[AFR][1000 genomes]
rs11988831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11998674	1.00[AMR][1000 genomes]
rs2409657	1.00[AMR][1000 genomes]
rs2409661	1.00[AMR][1000 genomes]
rs28433774	1.00[AMR][1000 genomes]
rs34329624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35373412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4130765	0.92[AFR][1000 genomes]
rs6996372	1.00[AMR][1000 genomes]
rs72549106	1.00[AMR][1000 genomes]
rs72549108	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv917085	chr8:10237508-10828204	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1015932	chr8:10357101-10597856	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1021048	chr8:10504395-10591896	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
6	nsv527184	chr8:10530037-10589913	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1028266	chr8:10537081-10586112	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv1034829	chr8:10537081-10591896	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1032725	chr8:10561962-10585683	Bivalent Enhancer Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10567400-10570400	Enhancers	Esophagus	oesophagus
2	chr8:10567400-10571800	Enhancers	HMEC	breast
3	chr8:10567800-10571600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:10567800-10572200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr8:10568800-10570200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr8:10568800-10570200	Enhancers	Hela-S3	cervix
7	chr8:10568800-10570200	Enhancers	NHEK	skin
8	chr8:10568800-10571400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr8:10568800-10571800	Enhancers	HUVEC	blood vessel
10	chr8:10568800-10572600	Weak transcription	Right Atrium	heart
11	chr8:10568800-10573400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr8:10569000-10571400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:10569000-10571400	Weak transcription	Spleen	Spleen
14	chr8:10569000-10572000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr8:10569000-10573200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:10569400-10571600	Weak transcription	Left Ventricle	heart
17	chr8:10569600-10570800	Weak transcription	Lung	lung
18	chr8:10569600-10573400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr8:10569800-10570800	Enhancers	K562	blood
20	chr8:10570000-10570400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:10570000-10570600	Enhancers	A549	lung
22	chr8:10570000-10570800	Enhancers	Adipose Nuclei	Adipose

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