Variant report

Variant	rs35703936
Chromosome Location	chr3:48385557-48385558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1380260	0.92[AFR][1000 genomes]
rs1459245	0.87[AFR][1000 genomes]
rs1459247	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17080119	0.92[AFR][1000 genomes]
rs1870441	0.92[AFR][1000 genomes]
rs34138269	0.87[AFR][1000 genomes]
rs34537842	0.92[AFR][1000 genomes]
rs34857497	0.92[AFR][1000 genomes]
rs4858813	0.92[AFR][1000 genomes]
rs4858814	0.92[AFR][1000 genomes]
rs73831565	0.80[AFR][1000 genomes]
rs876597	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs986742	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834683	chr3:48301504-48493261	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48377600-48387800	Weak transcription	Placenta	Placenta
2	chr3:48381000-48386200	Weak transcription	HSMM	muscle
3	chr3:48381200-48386000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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