Variant report

Variant	rs35711367
Chromosome Location	chr11:77536441-77536442
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:77334512..77336360-chr11:77534997..77537223,2	K562	blood:
2	chr11:77491035..77492595-chr11:77536024..77537709,2	K562	blood:
3	chr11:77534875..77536501-chr11:77538853..77540760,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000074201	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10466710	0.94[CHB][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs108843	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10899396	0.90[ASN][1000 genomes]
rs10899397	0.91[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[ASN][1000 genomes]
rs10899401	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10899414	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11237264	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11237279	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12294668	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12418931	0.90[ASN][1000 genomes]
rs1783547	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2508184	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945228	0.86[GIH][hapmap];0.85[MEX][hapmap]
rs570786	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs581807	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs582866	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs584732	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs585172	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs585721	0.94[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs591283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs598933	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs600968	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs601551	0.94[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs603462	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs608389	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs608539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs609151	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs611671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs611906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs636041	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs647235	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs649671	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs658398	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs667213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs679155	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs679526	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs685474	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs694893	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7925289	0.89[ASN][1000 genomes]
rs7929313	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7936105	0.88[ASN][1000 genomes]
rs9667706	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs35711367	INTS4	Cis_1M	lymphoblastoid	RTeQTL
rs35711367	AQP11	cis	parietal	SCAN
rs35711367	ALG8	cis	parietal	SCAN
rs35711367	THRSP	cis	cerebellum	SCAN
rs35711367	NDUFC2	cis	cerebellum	SCAN
rs35711367	ALG8	cis	cerebellum	SCAN
rs35711367	KCTD14	cis	cerebellum	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77533000-77537600	Weak transcription	Thymus	Thymus
2	chr11:77533000-77544400	Weak transcription	Primary B cells from cord blood	blood
3	chr11:77533000-77553800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:77533000-77554000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:77533000-77554200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr11:77533400-77552200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:77533400-77552200	Weak transcription	Left Ventricle	heart
8	chr11:77533400-77553800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:77533400-77554000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr11:77533400-77565600	Weak transcription	Gastric	stomach
11	chr11:77533400-77565600	Weak transcription	Pancreas	Pancrea
12	chr11:77533600-77538200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr11:77533600-77544200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:77533600-77552200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:77533600-77553000	Weak transcription	HUVEC	blood vessel
16	chr11:77534000-77543000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:77534200-77537800	Weak transcription	Fetal Stomach	stomach
18	chr11:77534600-77555400	Weak transcription	Lung	lung
19	chr11:77534800-77543800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:77534800-77544400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:77535000-77544200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:77535200-77548800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:77535200-77551800	Weak transcription	Ovary	ovary
24	chr11:77535200-77552800	Weak transcription	Aorta	Aorta
25	chr11:77535200-77553800	Weak transcription	NHDF-Ad	bronchial
26	chr11:77535200-77554200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:77535200-77554400	Weak transcription	HSMM	muscle
28	chr11:77535400-77538400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:77535400-77538800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:77535400-77544400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:77535400-77544400	Weak transcription	Fetal Lung	lung
32	chr11:77535400-77552000	Weak transcription	Fetal Intestine Large	intestine
33	chr11:77535400-77552200	Weak transcription	Liver	Liver
34	chr11:77535400-77553400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:77535400-77553400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr11:77535400-77554200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:77535400-77555000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:77535400-77565600	Weak transcription	HepG2	liver
39	chr11:77535600-77538400	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:77535800-77536600	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr11:77535800-77537600	Weak transcription	Fetal Intestine Small	intestine
42	chr11:77535800-77552000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:77535800-77552200	Weak transcription	Adipose Nuclei	Adipose
44	chr11:77535800-77552200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr11:77536000-77544400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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