Variant report
| Variant | rs35712823 |
|---|---|
| Chromosome Location | chr6:86428492-86428493 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs13194512 | 0.87[EUR][1000 genomes] |
| rs13198956 | 0.87[EUR][1000 genomes] |
| rs13202606 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16876340 | 0.87[EUR][1000 genomes] |
| rs16876385 | 0.87[EUR][1000 genomes] |
| rs1793 | 0.87[EUR][1000 genomes] |
| rs34898046 | 0.87[EUR][1000 genomes] |
| rs34936540 | 0.87[EUR][1000 genomes] |
| rs35121980 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35694036 | 0.87[EUR][1000 genomes] |
| rs35988746 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs36088473 | 0.87[EUR][1000 genomes] |
| rs3900740 | 0.87[EUR][1000 genomes] |
| rs4707213 | 0.87[EUR][1000 genomes] |
| rs55648312 | 0.87[EUR][1000 genomes] |
| rs55810446 | 0.87[EUR][1000 genomes] |
| rs67493405 | 0.87[EUR][1000 genomes] |
| rs6906121 | 0.87[EUR][1000 genomes] |
| rs6909402 | 0.87[EUR][1000 genomes] |
| rs6909654 | 0.87[EUR][1000 genomes] |
| rs6915519 | 0.83[EUR][1000 genomes] |
| rs71570764 | 0.87[EUR][1000 genomes] |
| rs71570766 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7738371 | 0.87[EUR][1000 genomes] |
| rs7740830 | 0.87[EUR][1000 genomes] |
| rs7771577 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028293 | chr6:86353958-86778912 | Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 100 gene(s) | inside rSNPs | diseases |
| 2 | nsv538350 | chr6:86353958-86778912 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 100 gene(s) | inside rSNPs | diseases |
| 3 | esv3340782 | chr6:86424133-86428531 | Active TSS Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | esv3340090 | chr6:86425433-86429731 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:86425200-86437200 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
