Variant report

Variant	rs35714505
Chromosome Location	chr19:38190686-38190687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2075282	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73031218	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38183200-38208800	Weak transcription	Fetal Heart	heart
2	chr19:38184200-38201200	Weak transcription	Colonic Mucosa	Colon
3	chr19:38184400-38208800	Weak transcription	HepG2	liver
4	chr19:38186400-38191200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:38186800-38191200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr19:38187000-38207800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr19:38187000-38208000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:38187200-38190800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr19:38187200-38191600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:38187400-38190800	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr19:38187400-38190800	Strong transcription	Brain Angular Gyrus	brain
12	chr19:38187400-38190800	Strong transcription	Brain Germinal Matrix	brain
13	chr19:38187400-38190800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr19:38187400-38190800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
15	chr19:38187400-38190800	Strong transcription	Placenta Amnion	Placenta Amnion
16	chr19:38187400-38190800	ZNF genes & repeats	HSMM	muscle
17	chr19:38187400-38190800	ZNF genes & repeats	NHLF	lung
18	chr19:38187400-38191000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
19	chr19:38187400-38191000	Strong transcription	Brain Anterior Caudate	brain
20	chr19:38187400-38191000	Strong transcription	Stomach Smooth Muscle	stomach
21	chr19:38187400-38191200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr19:38187400-38191400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr19:38187400-38191400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
24	chr19:38187400-38191400	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
25	chr19:38187400-38191400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
26	chr19:38187400-38191600	ZNF genes & repeats	Liver	Liver
27	chr19:38187400-38191600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
28	chr19:38187400-38191800	Strong transcription	Fetal Lung	lung
29	chr19:38187400-38192600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
30	chr19:38187400-38192600	Strong transcription	Left Ventricle	heart
31	chr19:38187400-38192800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr19:38187400-38192800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr19:38187400-38199000	ZNF genes & repeats	A549	lung
34	chr19:38187400-38205800	Strong transcription	Dnd41	blood
35	chr19:38187400-38208000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr19:38187600-38191200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr19:38187600-38191200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
38	chr19:38187600-38191600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
39	chr19:38187600-38191800	ZNF genes & repeats	Primary T cells from cord blood	blood
40	chr19:38187600-38192800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr19:38187800-38190800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr19:38187800-38191200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr19:38187800-38191600	ZNF genes & repeats	Primary B cells from cord blood	blood
44	chr19:38187800-38191600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
45	chr19:38187800-38192400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr19:38188000-38198200	Weak transcription	Pancreas	Pancrea
47	chr19:38188200-38190800	Strong transcription	Skeletal Muscle Male	skeletal muscle
48	chr19:38188200-38191000	Strong transcription	Fetal Muscle Trunk	muscle
49	chr19:38188200-38191200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
50	chr19:38188200-38197800	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links