Variant report

Variant	rs35716200
Chromosome Location	chr3:147085835-147085836
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11716981	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067005	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13079809	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13085931	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1503731	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17507918	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs17567193	0.95[ASN][1000 genomes]
rs2062599	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66483436	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67690801	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73166642	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73166647	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013080	chr3:147008962-147167690	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536763	chr3:147008962-147167690	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:147085200-147089200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
2	chr3:147085400-147086600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:147085400-147087800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr3:147085400-147088400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr3:147085400-147091600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:147085600-147086000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:147085600-147086000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr3:147085600-147086000	Bivalent Enhancer	HepG2	liver
9	chr3:147085600-147087200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr3:147085800-147086000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
11	chr3:147085800-147086000	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
12	chr3:147085800-147086600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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