Variant report

Variant	rs35717749
Chromosome Location	chr11:5486152-5486153
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	11:4778081-4789138..11:5482799-5488942	Hela-S3	cervix:
2	11:5482799-5488942..11:5714465-5718134	Hela-S3	cervix:
3	11:5250847-5268367..11:5482799-5488942	Hela-S3	cervix:
4	11:5146608-5154908..11:5482799-5488942	H1-hESC	embryonic stem cell:	embryo
5	11:5482799-5488942..11:5707362-5712027	H1-hESC	embryonic stem cell:	embryo
6	11:5482799-5488942..11:5566274-5571131	H1-hESC	embryonic stem cell:	embryo
7	11:5407716-5412355..11:5482799-5488942	H1-hESC	embryonic stem cell:	embryo
8	11:5482799-5488942..11:5700314-5707362	H1-hESC	embryonic stem cell:	embryo
9	11:5482799-5488942..11:5527719-5533869	H1-hESC	embryonic stem cell:	embryo
10	11:5482799-5488942..11:5721056-5732713	Hela-S3	cervix:
11	11:5482799-5488942..11:5533869-5541626	Hela-S3	cervix:

No data

No data

No data

Variant related genes	Relation type
ENSG00000260629	Chromatin interaction
ENSG00000184698	Chromatin interaction
ENSG00000167346	Chromatin interaction
ENSG00000223609	Chromatin interaction
ENSG00000229988	Chromatin interaction
ENSG00000171944	Chromatin interaction
ENSG00000175520	Chromatin interaction
ENSG00000132256	Chromatin interaction
ENSG00000175518	Chromatin interaction
ENSG00000181616	Chromatin interaction
ENSG00000132274	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10500643	1.00[ASN][1000 genomes]
rs12274619	0.90[ASN][1000 genomes]
rs12283662	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12286464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12288187	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291091	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17295737	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2467218	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2736569	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28532721	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35939397	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs411732	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs416586	0.88[ASN][1000 genomes]
rs446541	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4910566	1.00[ASN][1000 genomes]
rs4910795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7394415	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048608	chr11:5328516-5645179	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	60 gene(s)	inside rSNPs	diseases
2	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv896931	chr11:5357881-5505149	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv832057	chr11:5375585-5576200	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
5	nsv430314	chr11:5411744-5496924	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases
6	esv2757420	chr11:5416622-5492033	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases
7	esv2759800	chr11:5416622-5492033	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases
8	nsv896935	chr11:5427118-5490077	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
9	nsv896937	chr11:5427118-5493309	Strong transcription Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
10	nsv896936	chr11:5427118-5493370	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
11	esv34391	chr11:5431984-5493309	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
12	nsv1050290	chr11:5440287-5497617	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
13	nsv1046764	chr11:5442226-5497617	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
14	nsv1039047	chr11:5461214-5497617	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
15	nsv521722	chr11:5483825-5487596	Enhancers Weak transcription Strong transcription	Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
16	nsv896938	chr11:5484249-5505149	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
17	nsv971923	chr11:5485320-5491104	Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Weak transcription	TF binding region Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
18	nsv971924	chr11:5485320-5497371	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5485400-5486800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:5485400-5487800	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links