Variant report
| Variant | rs35725756 |
|---|---|
| Chromosome Location | chr2:56548575-56548576 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs13158505 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs13164539 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs13166151 | 1.00[AFR][1000 genomes] |
| rs13170460 | 0.87[AMR][1000 genomes] |
| rs13171861 | 0.87[AMR][1000 genomes] |
| rs13176583 | 0.87[AMR][1000 genomes] |
| rs13182833 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs13183729 | 0.87[AMR][1000 genomes] |
| rs13185667 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13190656 | 0.87[AMR][1000 genomes] |
| rs34019974 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs34045086 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs34117103 | 0.87[AMR][1000 genomes] |
| rs34150470 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34172359 | 1.00[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs34200527 | 0.87[AMR][1000 genomes] |
| rs34432074 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs34721779 | 0.80[AMR][1000 genomes] |
| rs35042461 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs35075767 | 1.00[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs35650027 | 0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs35730954 | 0.80[AMR][1000 genomes] |
| rs35834903 | 0.87[AMR][1000 genomes] |
| rs35973590 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs36004061 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs71618213 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs71618218 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530516 | chr2:56447922-56633505 | Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv874170 | chr2:56496589-56590865 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv834093 | chr2:56538097-56708677 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1004449 | chr2:56538460-56715861 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv874171 | chr2:56545845-56727178 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs35725756 | LOC647121 | Cis_chr | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:56527600-56561000 | Weak transcription | HSMM | muscle |
| 2 | chr2:56546200-56552800 | Weak transcription | Left Ventricle | heart |
