Variant report

Variant	rs35726835
Chromosome Location	chr4:7820795-7820796
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7818745..7823196-chr4:7823235..7826855,4	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11731942	0.97[ASN][1000 genomes]
rs11734860	0.97[ASN][1000 genomes]
rs12645103	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13103193	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13121514	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28684644	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28760598	0.83[ASN][1000 genomes]
rs35161247	0.97[ASN][1000 genomes]
rs35672467	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36020433	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3934645	0.93[ASN][1000 genomes]
rs4443284	0.97[ASN][1000 genomes]
rs4594724	0.97[ASN][1000 genomes]
rs58457272	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1007319	chr4:7705550-7832097	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv537018	chr4:7705550-7832097	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7770800-7828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:7784000-7821200	Weak transcription	Small Intestine	intestine
3	chr4:7787000-7829400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr4:7791000-7829400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr4:7800600-7828800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:7804000-7829200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:7805200-7822600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr4:7806400-7824600	Weak transcription	Fetal Thymus	thymus
9	chr4:7808000-7823000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:7808600-7830000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:7809600-7822400	Weak transcription	Brain Substantia Nigra	brain
12	chr4:7809600-7823000	Weak transcription	Brain Angular Gyrus	brain
13	chr4:7809600-7828000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr4:7809800-7823400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr4:7809800-7823400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr4:7810000-7823400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:7810200-7821000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:7812800-7822200	Genic enhancers	NH-A	brain
19	chr4:7813400-7825200	Weak transcription	Right Ventricle	heart
20	chr4:7813400-7829800	Weak transcription	Spleen	Spleen
21	chr4:7814000-7821000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr4:7814000-7822200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr4:7814200-7822400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:7814200-7823000	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr4:7814400-7823800	Weak transcription	Stomach Mucosa	stomach
26	chr4:7814400-7826600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr4:7814600-7821800	Strong transcription	Adipose Nuclei	Adipose
28	chr4:7814600-7822200	Strong transcription	HUES6 Cell Line	embryonic stem cell
29	chr4:7814600-7822600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:7814600-7822600	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr4:7814600-7824800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:7814800-7829800	Genic enhancers	Osteobl	bone
33	chr4:7815200-7821400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:7815400-7821200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:7815600-7821200	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr4:7816200-7820800	Strong transcription	NHEK	skin
37	chr4:7816200-7821200	Strong transcription	Aorta	Aorta
38	chr4:7816200-7821600	Strong transcription	Lung	lung
39	chr4:7816400-7823000	Strong transcription	HSMM	muscle
40	chr4:7816600-7824800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr4:7817000-7823800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:7817400-7821800	Weak transcription	Brain Anterior Caudate	brain
43	chr4:7817600-7823200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr4:7817800-7823400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr4:7818000-7822600	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr4:7818000-7830000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:7818200-7822000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:7818200-7829400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr4:7818400-7821600	Strong transcription	HUVEC	blood vessel
50	chr4:7818400-7821800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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