Variant report

Variant	rs3573
Chromosome Location	chr11:100860590-100860591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100851180..100854144-chr11:100858258..100861196,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17095849	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17096034	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17096036	0.83[AMR][1000 genomes]
rs57322001	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58708861	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7116749	0.88[YRI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945929	0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100844800-100863000	Weak transcription	Brain Anterior Caudate	brain
2	chr11:100848000-100861800	Weak transcription	Fetal Heart	heart
3	chr11:100848200-100861200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:100848200-100866000	Weak transcription	Psoas Muscle	Psoas
5	chr11:100848400-100860800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:100848400-100863200	Weak transcription	Fetal Intestine Large	intestine
7	chr11:100848400-100864600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr11:100848600-100863400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:100848600-100865200	Weak transcription	Left Ventricle	heart
10	chr11:100848600-100865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:100848800-100864800	Weak transcription	HSMM	muscle
12	chr11:100849000-100862000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:100849000-100863000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr11:100849200-100867400	Weak transcription	Fetal Lung	lung
15	chr11:100850000-100861600	Weak transcription	Adipose Nuclei	Adipose
16	chr11:100850600-100864600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:100851000-100870400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr11:100854600-100860600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr11:100856400-100862600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:100857400-100864600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:100857600-100870400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:100858400-100861200	Weak transcription	HSMMtube	muscle
23	chr11:100858600-100861000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:100858600-100862800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr11:100858600-100865600	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:100858600-100870400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:100859200-100862600	Strong transcription	Liver	Liver
28	chr11:100859400-100861200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr11:100859600-100861200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:100860000-100864600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:100860200-100861000	Weak transcription	Placenta	Placenta

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