Variant report

Variant	rs35730939
Chromosome Location	chr6:161470307-161470308
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:161426027..161428783-chr6:161467805..161470690,2	K562	blood:
2	chr6:161462648..161465458-chr6:161468679..161470862,2	K562	blood:
3	chr6:161466990..161469304-chr6:161469601..161471950,4	K562	blood:
4	chr6:161462428..161466451-chr6:161468081..161472167,5	K562	blood:
5	chr6:161466990..161468844-chr6:161469862..161471950,2	K562	blood:
6	chr6:161467892..161471897-chr6:161472211..161475123,4	K562	blood:
7	chr6:161468713..161471223-chr6:161633805..161635902,2	K562	blood:

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16892149	1.00[AMR][1000 genomes]
rs6901087	1.00[AMR][1000 genomes]
rs6923142	1.00[AMR][1000 genomes]
rs6935472	1.00[AMR][1000 genomes]
rs7746367	1.00[AMR][1000 genomes]
rs7747038	1.00[AMR][1000 genomes]
rs7758117	1.00[AMR][1000 genomes]
rs7767134	1.00[AMR][1000 genomes]
rs9689684	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161416600-161475200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:161435000-161490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:161443800-161478600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:161448800-161472400	Weak transcription	A549	lung
5	chr6:161449000-161494400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:161452800-161489400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:161453600-161470400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr6:161453600-161506600	Weak transcription	Small Intestine	intestine
9	chr6:161455200-161495800	Weak transcription	Fetal Brain Male	brain
10	chr6:161456400-161501600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:161456800-161477000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:161456800-161485800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:161458200-161471800	Weak transcription	Colonic Mucosa	Colon
14	chr6:161459400-161472000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:161459400-161488800	Weak transcription	Brain Angular Gyrus	brain
16	chr6:161459400-161508800	Weak transcription	Hela-S3	cervix
17	chr6:161459800-161470400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:161459800-161496600	Weak transcription	Fetal Kidney	kidney
19	chr6:161459800-161502800	Weak transcription	HUVEC	blood vessel
20	chr6:161460000-161499200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:161460200-161471400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:161460200-161473000	Weak transcription	Right Ventricle	heart
23	chr6:161460400-161487200	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:161460400-161488800	Weak transcription	Fetal Heart	heart
25	chr6:161460600-161495600	Weak transcription	HSMMtube	muscle
26	chr6:161462000-161478400	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:161462600-161470800	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:161462600-161472200	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:161462600-161472400	Weak transcription	Spleen	Spleen
30	chr6:161462800-161470800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:161462800-161473000	Weak transcription	Brain Germinal Matrix	brain
32	chr6:161462800-161474200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:161462800-161477400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:161462800-161478400	Weak transcription	Esophagus	oesophagus
35	chr6:161462800-161485800	Weak transcription	Aorta	Aorta
36	chr6:161462800-161497200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:161462800-161497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:161462800-161508200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:161463000-161489000	Weak transcription	Fetal Brain Female	brain
40	chr6:161463000-161491600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:161463200-161470600	Weak transcription	Fetal Intestine Small	intestine
42	chr6:161463200-161488000	Weak transcription	Ovary	ovary
43	chr6:161463400-161491600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:161463600-161495600	Weak transcription	Pancreas	Pancrea
45	chr6:161463800-161499200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:161464800-161470600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:161465400-161478200	Weak transcription	NHEK	skin
48	chr6:161465800-161470400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:161468400-161474200	Strong transcription	K562	blood
50	chr6:161468600-161471000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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