Variant report
| Variant | rs35732569 |
|---|---|
| Chromosome Location | chr14:80284502-80284503 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11628399 | 0.93[ASN][1000 genomes] |
| rs11628915 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12586263 | 0.87[ASN][1000 genomes] |
| rs12586501 | 0.93[ASN][1000 genomes] |
| rs12588661 | 0.93[ASN][1000 genomes] |
| rs12588956 | 0.93[ASN][1000 genomes] |
| rs12589656 | 0.90[ASN][1000 genomes] |
| rs12590090 | 0.93[ASN][1000 genomes] |
| rs12590550 | 0.93[ASN][1000 genomes] |
| rs12881435 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs17174723 | 0.87[ASN][1000 genomes] |
| rs17764518 | 0.87[ASN][1000 genomes] |
| rs17764884 | 0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs34549185 | 0.90[ASN][1000 genomes] |
| rs35224540 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs56122467 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs67488951 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs7155646 | 0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7158292 | 0.87[ASN][1000 genomes] |
| rs72696796 | 0.87[ASN][1000 genomes] |
| rs72698405 | 0.93[ASN][1000 genomes] |
| rs8021767 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1045241 | chr14:79885361-80734201 | Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv902113 | chr14:80172094-80929699 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:80281000-80286600 | Weak transcription | Brain Inferior Temporal Lobe | brain |
