Variant report

Variant	rs35733311
Chromosome Location	chr8:39894283-39894284
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11991143	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13266659	0.83[EUR][1000 genomes]
rs13270221	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2981155	0.82[EUR][1000 genomes]
rs6415701	0.83[EUR][1000 genomes]
rs6987208	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1033371	chr8:39749437-39899540	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39891200-39894400	Enhancers	Hela-S3	cervix
2	chr8:39891400-39895400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:39891400-39896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:39891400-39898400	Weak transcription	Pancreas	Pancrea
5	chr8:39892600-39895200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:39892600-39895200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr8:39892600-39896800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:39892600-39896800	Weak transcription	Fetal Lung	lung
9	chr8:39892600-39897800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr8:39892600-39898200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:39893600-39895200	Weak transcription	Fetal Intestine Small	intestine
12	chr8:39893600-39895200	Weak transcription	A549	lung
13	chr8:39893600-39898400	Weak transcription	Liver	Liver
14	chr8:39893600-39898400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr8:39893800-39895000	Weak transcription	Fetal Intestine Large	intestine
16	chr8:39893800-39897600	Weak transcription	HepG2	liver
17	chr8:39894200-39897800	Weak transcription	Colon Smooth Muscle	Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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