Variant report

Variant	rs35737159
Chromosome Location	chr6:150169015-150169016
allele	-/CA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150168730-150169429	K562	blood:	n/a	n/a
2	JUN	chr6:150168597-150169060	K562	blood:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868
3	FOSL1	chr6:150168686-150169098	K562	blood:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168859-150168870 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868
4	JUN	chr6:150168686-150169058	K562	blood:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868
5	ATF3	chr6:150168612-150169050	K562	blood:	n/a	n/a
6	CEBPB	chr6:150168779-150169032	A549	lung:	n/a	n/a
7	NFIC	chr6:150168581-150169198	SK-N-SH	brain:	n/a	chr6:150168836-150168852 chr6:150168826-150168854 chr6:150168838-150168854 chr6:150168837-150168854
8	JUN	chr6:150168679-150169054	HUVEC	blood vessel:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868
9	FOSL2	chr6:150168610-150169045	A549	lung:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868
10	POLR2A	chr6:150168627-150169077	U87	brain:	n/a	n/a
11	BHLHE40	chr6:150168195-150169061	HepG2	liver:	n/a	n/a
12	MYC	chr6:150168722-150169145	MCF10A-Er-Src	breast:	n/a	chr6:150168861-150168870
13	EP300	chr6:150168725-150169027	SK-N-SH_RA	brain:	n/a	chr6:150168861-150168870
14	EP300	chr6:150168593-150169035	K562	blood:	n/a	chr6:150168861-150168870
15	EP300	chr6:150168554-150169199	A549	lung:	n/a	chr6:150168861-150168870
16	STAT3	chr6:150168740-150169197	MCF10A-Er-Src	breast:	n/a	n/a
17	ARID3A	chr6:150168782-150169147	K562	blood:	n/a	n/a
18	GATA3	chr6:150168083-150169335	SK-N-SH	brain:	n/a	chr6:150168876-150168885 chr6:150168859-150168868
19	EP300	chr6:150168111-150169259	SK-N-SH	brain:	n/a	chr6:150168861-150168870
20	JUND	chr6:150168591-150169140	T-47D	breast:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168859-150168870 chr6:150168861-150168868
21	FOS	chr6:150168638-150169252	MCF10A-Er-Src	breast:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868 chr6:150168859-150168870
22	JUN	chr6:150168690-150169040	K562	blood:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868
23	GATA3	chr6:150168160-150169378	MCF-7	breast:	n/a	chr6:150168876-150168885 chr6:150168859-150168868
24	JUND	chr6:150168094-150169452	SK-N-SH	brain:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168242-150168252 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168242-150168252 chr6:150168859-150168871 chr6:150168859-150168870 chr6:150168861-150168868 chr6:150168242-150168252
25	USF1	chr6:150169010-150169373	SK-N-SH_RA	brain:	n/a	n/a
26	MAFK	chr6:150168683-150169038	HepG2	liver:	n/a	chr6:150168861-150168871 chr6:150168878-150168888 chr6:150168809-150168824
27	MAFK	chr6:150168631-150169048	K562	blood:	n/a	chr6:150168861-150168871 chr6:150168878-150168888 chr6:150168809-150168824
28	FOSL2	chr6:150168566-150169266	SK-N-SH	brain:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868
29	JUN	chr6:150168273-150169339	K562	blood:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868
30	JUND	chr6:150168540-150169284	MCF-7	breast:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168859-150168870 chr6:150168861-150168868
31	PBX3	chr6:150168131-150169198	SK-N-SH	brain:	n/a	chr6:150168514-150168525
32	FOS	chr6:150168601-150169114	HUVEC	blood vessel:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868 chr6:150168859-150168870
33	JUND	chr6:150168529-150169268	SK-N-SH	brain:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168859-150168870 chr6:150168861-150168868
34	TEAD4	chr6:150168611-150169038	K562	blood:	n/a	n/a
35	FOSL1	chr6:150168539-150169279	HCT-116	colon:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168859-150168870 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868
36	JUN	chr6:150168659-150169218	Hela-S3	cervix:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168861-150168868
37	ARID3A	chr6:150168716-150169082	HepG2	liver:	n/a	n/a
38	CEBPB	chr6:150168674-150169066	K562	blood:	n/a	n/a
39	JUND	chr6:150168681-150169043	A549	lung:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168859-150168871 chr6:150168859-150168870 chr6:150168861-150168868
40	TCF12	chr6:150167177-150169399	SK-N-SH	brain:	n/a	chr6:150167615-150167625 chr6:150168383-150168390 chr6:150167569-150167579
41	CEBPB	chr6:150168711-150169234	Hela-S3	cervix:	n/a	n/a
42	TCF12	chr6:150167959-150169307	SK-N-SH	brain:	n/a	chr6:150168383-150168390
43	KAP1	chr6:150168644-150169192	HEK293	kidney:	n/a	n/a
44	NFIC	chr6:150168607-150169038	HepG2	liver:	n/a	chr6:150168836-150168852 chr6:150168826-150168854 chr6:150168838-150168854 chr6:150168837-150168854
45	MAZ	chr6:150168761-150169028	K562	blood:	n/a	chr6:150168861-150168870
46	JUND	chr6:150168166-150169042	HepG2	liver:	n/a	chr6:150168876-150168888 chr6:150168861-150168869 chr6:150168242-150168252 chr6:150168861-150168869 chr6:150168860-150168870 chr6:150168242-150168252 chr6:150168859-150168871 chr6:150168859-150168870 chr6:150168861-150168868 chr6:150168242-150168252
47	BHLHE40	chr6:150168827-150169113	K562	blood:	n/a	n/a
48	EP300	chr6:150168650-150169115	SK-N-SH_RA	brain:	n/a	chr6:150168861-150168870
49	ATF1	chr6:150168706-150169270	K562	blood:	n/a	n/a
50	MAX	chr6:150168733-150169150	Hela-S3	cervix:	n/a	chr6:150168861-150168870

No.	Distal block	Cell Line	Cell type
1	chr6:150166972..150170448-chr6:150175876..150178840,3	K562	blood:
2	chr6:150166079..150172408-chr6:150181587..150186360,13	MCF-7	breast:
3	chr6:150166110..150169897-chr6:150177295..150181208,4	MCF-7	breast:
4	chr6:150167839..150171816-chr6:150186693..150189063,3	K562	blood:
5	chr6:150168933..150170448-chr6:150175749..150177376,2	K562	blood:
6	chr6:150160714..150164051-chr6:150166023..150170073,4	MCF-7	breast:
7	chr6:150164239..150168667-chr6:150168889..150173398,4	K562	blood:
8	chr6:150168942..150171816-chr6:150186693..150188431,2	K562	blood:
9	chr6:150166050..150170337-chr6:150173456..150176763,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000273132	TF binding region
ENSG00000120256	Chromatin interaction
ENSG00000273132	Chromatin interaction
ENSG00000268592	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6936403	1.00[AFR][1000 genomes]
rs7766951	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	esv1793743	chr6:150167398-150170444	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
2	chr6:150105800-150176400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:150152800-150172600	Weak transcription	Aorta	Aorta
4	chr6:150155800-150182600	Weak transcription	Dnd41	blood
5	chr6:150158800-150176400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:150159200-150172800	Weak transcription	Spleen	Spleen
7	chr6:150162200-150175800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:150162600-150172000	Weak transcription	Liver	Liver
9	chr6:150162600-150177200	Weak transcription	Fetal Lung	lung
10	chr6:150163400-150169200	Enhancers	Placenta	Placenta
11	chr6:150163600-150175800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:150164200-150171800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:150164400-150181800	Weak transcription	Brain Germinal Matrix	brain
14	chr6:150164600-150169600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:150164800-150169400	Enhancers	HMEC	breast
16	chr6:150165000-150181800	Weak transcription	Fetal Brain Female	brain
17	chr6:150166000-150169200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:150166000-150169400	Enhancers	Brain Angular Gyrus	brain
19	chr6:150166200-150169200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:150166200-150169400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:150166400-150169600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:150167000-150169200	Enhancers	Brain Anterior Caudate	brain
23	chr6:150167000-150169200	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr6:150167000-150169200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr6:150167000-150169200	Enhancers	Fetal Heart	heart
26	chr6:150167000-150169400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:150167000-150169400	Enhancers	HSMMtube	muscle
28	chr6:150167000-150169400	Enhancers	NHDF-Ad	bronchial
29	chr6:150167000-150170000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:150167200-150169200	Enhancers	Adipose Nuclei	Adipose
31	chr6:150167200-150169200	Enhancers	Brain Cingulate Gyrus	brain
32	chr6:150167200-150169200	Enhancers	Brain Hippocampus Middle	brain
33	chr6:150167200-150169400	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr6:150167200-150169400	Enhancers	Colon Smooth Muscle	Colon
35	chr6:150167200-150169400	Enhancers	Duodenum Mucosa	Duodenum
36	chr6:150167200-150169400	Enhancers	Stomach Mucosa	stomach
37	chr6:150167400-150169200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr6:150167400-150169400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:150167400-150169400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:150167400-150169400	Enhancers	HepG2	liver
41	chr6:150167400-150169800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:150167600-150169200	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr6:150167600-150169400	Enhancers	NHLF	lung
44	chr6:150167600-150169600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:150167600-150169600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr6:150167600-150169600	Enhancers	Hela-S3	cervix
47	chr6:150167600-150169600	Enhancers	Osteobl	bone
48	chr6:150167800-150181400	Weak transcription	Right Atrium	heart
49	chr6:150168000-150169400	Enhancers	HUVEC	blood vessel
50	chr6:150168200-150169200	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links