Variant report

Variant	rs35740247
Chromosome Location	chr11:62996801-62996802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:62996644-62997046	MCF10A-Er-Src	breast:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:62996801-62996851	MCF-7	breast:	n/a
2	chr11:62996801-62996851	HMEC	breast:	n/a
3	chr11:62996801-62996851	AG09319	gingival:	n/a
4	chr11:62996801-62996851	A549	lung:	n/a
5	chr11:62996801-62996851	HRE	kidney:	n/a
6	chr11:62996801-62996851	NT2-D1	testis:	n/a
7	chr11:62996801-62996851	HEK293	kidney:	embryo
8	chr11:62996801-62996851	HRCEpiC	kidney:	n/a
9	chr11:62996801-62996851	RPTEC	kidney:	n/a
10	chr11:62996801-62996851	PANC-1	pancreas:	n/a
11	chr11:62996801-62996851	MCF10A-Er-Src	breast:	n/a
12	chr11:62996801-62996851	ProgFib	skin:	n/a
13	chr11:62996801-62996851	SAEC	small airway:	n/a
14	chr11:62996801-62996851	ovcar-3	ovarian:	n/a
15	chr11:62996801-62996851	GM12878	blood:	n/a
16	chr11:62996801-62996851	Hela-S3	cervix:	n/a
17	chr11:62996801-62996851	AG10803	skin:	n/a
18	chr11:62996801-62996851	AG04450	lung:	fetal
19	chr11:62996801-62996851	NB4	blood:	n/a
20	chr11:62996801-62996851	LNCaP	prostate:	n/a
21	chr11:62996801-62996851	PrEC	prostate:	n/a
22	chr11:62996801-62996851	K562	blood:	n/a
23	chr11:62996801-62996851	Caco-2	colon:	n/a
24	chr11:62996801-62996851	HCT-116	colon:	n/a
25	chr11:62996801-62996851	AoSMC	blood vessel:	n/a
26	chr11:62996801-62996851	SK-N-SH	brain:	n/a
27	chr11:62996801-62996851	HepG2	liver:	n/a
28	chr11:62996801-62996851	BE2_C	brain:	n/a
29	chr11:62996801-62996851	PFSK-1	brain:	n/a
30	chr11:62996801-62996851	HUVEC	blood vessel:	n/a
31	chr11:62996801-62996851	NH-A	brain:	n/a
32	chr11:62996801-62996851	T-47D	breast:	n/a
33	chr11:62996801-62996851	HNPCEpiC	eye:	n/a
34	chr11:62996801-62996851	HCF	heart:	n/a
35	chr11:62996801-62996851	HRPEpiC	eye:	n/a
36	chr11:62996801-62996851	HEEpiC	esophagus:	n/a
37	chr11:62996801-62996851	ECC-1	luminal epithelium:	n/a
38	chr11:62996801-62996851	HL-60	blood:	n/a
39	chr11:62996801-62996851	Jurkat	blood:	n/a
40	chr11:62996801-62996851	HCM	heart:	n/a
41	chr11:62996801-62996851	HPAEpiC	pulmonary alveolar:	n/a
42	chr11:62996801-62996851	SK-N-MC	brain:	n/a
43	chr11:62996801-62996851	AG04449	skin:	fetal
44	chr11:62996801-62996851	BJ	skin:	n/a
45	chr11:62996801-62996851	HIPEpiC	eye:	n/a
46	chr11:62996801-62996851	GM12891	blood:	n/a
47	chr11:62996801-62996851	NHDF-neo	bronchial:	n/a
48	chr11:62996801-62996851	HCPEpiC	choroid plexus:	n/a
49	chr11:62996801-62996851	GM06990	blood:	n/a
50	chr11:62996801-62996851	AG09309	skin:	n/a

No data

Variant related genes	Relation type
SLC22A25	TF binding region
SLC22A25	CpG island

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1193644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2155324	1.00[EUR][1000 genomes]
rs505409	0.89[EUR][1000 genomes]
rs55794503	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55868413	1.00[AMR][1000 genomes]
rs55885734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55889421	1.00[EUR][1000 genomes]
rs55935820	1.00[EUR][1000 genomes]
rs56014813	1.00[EUR][1000 genomes]
rs56260618	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56303533	1.00[EUR][1000 genomes]
rs61927968	0.89[EUR][1000 genomes]
rs61927995	1.00[AMR][1000 genomes]
rs61927996	1.00[AMR][1000 genomes]
rs61928010	1.00[AMR][1000 genomes]
rs61928108	1.00[EUR][1000 genomes]
rs61928111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61928159	1.00[EUR][1000 genomes]
rs61930187	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61930193	1.00[EUR][1000 genomes]
rs7114405	0.89[EUR][1000 genomes]
rs7931671	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045308	chr11:62803635-63109338	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv541059	chr11:62803635-63109338	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv555177	chr11:62847518-63110569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049725	chr11:62848172-63057827	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv541060	chr11:62848172-63057827	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047571	chr11:62848172-63109338	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv430397	chr11:62852616-63072310	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv897627	chr11:62984868-63119486	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:62994600-62998200	Enhancers	HepG2	liver
2	chr11:62996800-62998000	Genic enhancers	Liver	Liver

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