Variant report

Variant	rs35743047
Chromosome Location	chr4:55433854-55433855
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:55421421..55423716-chr4:55432177..55433875,2	K562	blood:
2	chr4:55429704..55431714-chr4:55433610..55435874,3	K562	blood:
3	chr4:55432509..55435392-chr4:55437347..55440504,3	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13101303	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13135683	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1848345	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28708475	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35843662	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35927253	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695210	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008793	chr4:55060925-55535807	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv537098	chr4:55060925-55535807	Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv999400	chr4:55143598-55776995	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv997430	chr4:55253397-55529288	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:55406200-55434200	Weak transcription	Right Atrium	heart
2	chr4:55431200-55434200	Weak transcription	Aorta	Aorta
3	chr4:55431200-55434600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:55432400-55434400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:55432600-55435600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:55432800-55434000	Weak transcription	NHLF	lung
7	chr4:55433000-55434000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:55433000-55434000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:55433000-55434200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:55433200-55434200	Weak transcription	Lung	lung
11	chr4:55433200-55434200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:55433200-55434400	Weak transcription	Esophagus	oesophagus
13	chr4:55433400-55435600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:55433400-55435600	Enhancers	K562	blood
15	chr4:55433600-55434000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:55433600-55434200	Weak transcription	Stomach Mucosa	stomach
17	chr4:55433800-55434400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:55433800-55434800	Enhancers	Pancreas	Pancrea
19	chr4:55433800-55434800	Enhancers	Psoas Muscle	Psoas
20	chr4:55433800-55434800	Enhancers	NH-A	brain
21	chr4:55433800-55435000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:55433800-55435000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:55433800-55435000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr4:55433800-55435000	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr4:55433800-55435600	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links