Variant report

Variant	rs35745796
Chromosome Location	chr8:104513343-104513344
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr8:104513188-104514226	H1-hESC	embryonic stem cell:	n/a	chr8:104513884-104513892 chr8:104513827-104513836 chr8:104513880-104513900 chr8:104513824-104513838 chr8:104513883-104513893 chr8:104513420-104513434 chr8:104513830-104513839 chr8:104513827-104513841 chr8:104513390-104513404 chr8:104513821-104513835 chr8:104513673-104513685 chr8:104513883-104513905 chr8:104513423-104513437 chr8:104513396-104513405 chr8:104513357-104513371
2	TAF1	chr8:104512546-104514194	H1-neurons	neurons:	n/a	n/a
3	SIN3A	chr8:104510669-104514416	H1-hESC	embryonic stem cell:	n/a	chr8:104512440-104512453 chr8:104512690-104512703 chr8:104512322-104512335 chr8:104514131-104514145 chr8:104511737-104511746 chr8:104511075-104511086 chr8:104514132-104514141
4	REST	chr8:104513244-104513472	PANC-1	pancreas:	n/a	n/a
5	POLR2A	chr8:104512788-104514328	H1-hESC	embryonic stem cell:	n/a	n/a
6	ZNF263	chr8:104512741-104514301	HEK293-T-REx	kidney:	n/a	chr8:104512921-104512930
7	POLR2A	chr8:104512465-104514198	H1-hESC	embryonic stem cell:	n/a	n/a
8	REST	chr8:104512423-104514580	H1-neurons	neurons:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106 chr8:104512792-104512805 chr8:104512440-104512453 chr8:104512716-104512729 chr8:104513032-104513045 chr8:104512447-104512457
9	MAX	chr8:104512587-104514360	ECC-1	luminal epithelium:	n/a	n/a
10	SIN3AK20	chr8:104513191-104514338	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr8:104512869-104513380	SK-N-SH	brain:	n/a	n/a
12	REST	chr8:104512970-104514361	U87	brain:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106 chr8:104513032-104513045
13	ZNF143	chr8:104512529-104514316	H1-hESC	embryonic stem cell:	n/a	chr8:104513424-104513434 chr8:104512819-104512837 chr8:104513824-104513834
14	YY1	chr8:104513318-104514212	A549	lung:	n/a	chr8:104513884-104513892 chr8:104513827-104513836 chr8:104513880-104513900 chr8:104513824-104513838 chr8:104513883-104513893 chr8:104513420-104513434 chr8:104513830-104513839 chr8:104513827-104513841 chr8:104513390-104513404 chr8:104513821-104513835 chr8:104513673-104513685 chr8:104513883-104513905 chr8:104513423-104513437 chr8:104513396-104513405 chr8:104513357-104513371
15	MAX	chr8:104512778-104514356	MCF-7	breast:	n/a	n/a
16	REST	chr8:104512981-104514395	PFSK-1	brain:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106 chr8:104513032-104513045
17	YY1	chr8:104512932-104514261	ECC-1	luminal epithelium:	n/a	chr8:104512943-104512954 chr8:104513884-104513892 chr8:104513827-104513836 chr8:104513880-104513900 chr8:104512965-104512976 chr8:104513824-104513838 chr8:104513883-104513893 chr8:104513420-104513434 chr8:104513830-104513839 chr8:104513827-104513841 chr8:104513390-104513404 chr8:104513821-104513835 chr8:104513031-104513045 chr8:104513673-104513685 chr8:104513883-104513905 chr8:104513423-104513437 chr8:104513396-104513405 chr8:104513357-104513371
18	TAF1	chr8:104513325-104514228	H1-hESC	embryonic stem cell:	n/a	n/a
19	REST	chr8:104512607-104514702	HL-60	blood:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106 chr8:104512792-104512805 chr8:104512716-104512729 chr8:104513032-104513045
20	REST	chr8:104512972-104514359	U87	brain:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106 chr8:104513032-104513045
21	POLR2A	chr8:104513031-104513346	H1-hESC	embryonic stem cell:	n/a	n/a
22	YY1	chr8:104512884-104514271	SK-N-SH_RA	brain:	n/a	chr8:104512943-104512954 chr8:104513884-104513892 chr8:104513827-104513836 chr8:104513880-104513900 chr8:104512965-104512976 chr8:104513824-104513838 chr8:104513883-104513893 chr8:104513420-104513434 chr8:104513830-104513839 chr8:104513827-104513841 chr8:104513390-104513404 chr8:104513821-104513835 chr8:104513031-104513045 chr8:104513673-104513685 chr8:104513883-104513905 chr8:104513423-104513437 chr8:104513396-104513405 chr8:104513357-104513371
23	REST	chr8:104512740-104514670	ECC-1	luminal epithelium:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106 chr8:104512792-104512805 chr8:104513032-104513045
24	REST	chr8:104513279-104514315	HL-60	blood:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106
25	POLR2A	chr8:104512693-104514090	MCF-7	breast:	n/a	n/a
26	YY1	chr8:104512899-104514261	NT2-D1	testis:	n/a	chr8:104512943-104512954 chr8:104513884-104513892 chr8:104513827-104513836 chr8:104513880-104513900 chr8:104512965-104512976 chr8:104513824-104513838 chr8:104513883-104513893 chr8:104513420-104513434 chr8:104513830-104513839 chr8:104513827-104513841 chr8:104513390-104513404 chr8:104513821-104513835 chr8:104513031-104513045 chr8:104513673-104513685 chr8:104513883-104513905 chr8:104513423-104513437 chr8:104513396-104513405 chr8:104513357-104513371
27	POLR2A	chr8:104513186-104513393	H1-hESC	embryonic stem cell:	n/a	n/a
28	MYC	chr8:104513266-104514018	MCF-7	breast:	n/a	n/a
29	SIN3AK20	chr8:104512919-104514394	MCF-7	breast:	n/a	n/a
30	YY1	chr8:104512692-104514327	ECC-1	luminal epithelium:	n/a	chr8:104512943-104512954 chr8:104513884-104513892 chr8:104513827-104513836 chr8:104513880-104513900 chr8:104512965-104512976 chr8:104513824-104513838 chr8:104513883-104513893 chr8:104513420-104513434 chr8:104513830-104513839 chr8:104513827-104513841 chr8:104513390-104513404 chr8:104513821-104513835 chr8:104513031-104513045 chr8:104513673-104513685 chr8:104513883-104513905 chr8:104513423-104513437 chr8:104513396-104513405 chr8:104513357-104513371
31	REST	chr8:104512792-104514355	SK-N-SH	brain:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106 chr8:104512792-104512805 chr8:104513032-104513045
32	HA-E2F1	chr8:104513010-104514237	MCF-7	breast:	n/a	chr8:104513830-104513839 chr8:104513635-104513642 chr8:104513635-104513642 chr8:104513542-104513553 chr8:104513038-104513048 chr8:104513542-104513553 chr8:104513546-104513553 chr8:104513634-104513646 chr8:104513635-104513642
33	POLR2A	chr8:104513127-104513356	H1-hESC	embryonic stem cell:	n/a	n/a
34	REST	chr8:104512943-104514422	PFSK-1	brain:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106 chr8:104513032-104513045
35	MXI1	chr8:104510187-104514952	SK-N-SH	brain:	n/a	n/a
36	REST	chr8:104512758-104514543	MCF-7	breast:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106 chr8:104512792-104512805 chr8:104513032-104513045
37	YY1	chr8:104512707-104514207	H1-hESC	embryonic stem cell:	n/a	chr8:104512943-104512954 chr8:104513884-104513892 chr8:104513827-104513836 chr8:104513880-104513900 chr8:104512965-104512976 chr8:104513824-104513838 chr8:104513883-104513893 chr8:104513420-104513434 chr8:104513830-104513839 chr8:104513827-104513841 chr8:104513390-104513404 chr8:104513821-104513835 chr8:104513031-104513045 chr8:104513673-104513685 chr8:104513883-104513905 chr8:104513423-104513437 chr8:104513396-104513405 chr8:104513357-104513371
38	HDAC2	chr8:104512861-104514269	MCF-7	breast:	n/a	n/a
39	REST	chr8:104512414-104514743	ECC-1	luminal epithelium:	n/a	chr8:104514141-104514150 chr8:104514130-104514144 chr8:104514132-104514142 chr8:104514096-104514106 chr8:104512792-104512805 chr8:104512440-104512453 chr8:104512716-104512729 chr8:104513032-104513045 chr8:104512447-104512457
40	MAX	chr8:104513163-104514298	H1-hESC	embryonic stem cell:	n/a	n/a
41	ELF1	chr8:104512805-104514246	MCF-7	breast:	n/a	chr8:104513827-104513836 chr8:104513757-104513766
42	YY1	chr8:104513308-104514294	SK-N-SH	brain:	n/a	chr8:104513884-104513892 chr8:104513827-104513836 chr8:104513880-104513900 chr8:104513824-104513838 chr8:104513883-104513893 chr8:104513420-104513434 chr8:104513830-104513839 chr8:104513827-104513841 chr8:104513390-104513404 chr8:104513821-104513835 chr8:104513673-104513685 chr8:104513883-104513905 chr8:104513423-104513437 chr8:104513396-104513405 chr8:104513357-104513371
43	REST	chr8:104513269-104513397	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:52209323..52210926-chr8:104513157..104515748,2	MCF-7	breast:
2	chr8:104424987..104428689-chr8:104510615..104514344,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253477	TF binding region
ENSG00000164934	Chromatin interaction
ENSG00000171940	Chromatin interaction
ENSG00000164933	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10097034	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10097208	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10097250	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10099086	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10106671	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10505047	0.88[ASN][1000 genomes]
rs10955317	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10955318	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10955323	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11776639	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11783518	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11784011	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12114365	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12544166	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12544298	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12547300	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12550530	0.94[ASN][1000 genomes]
rs12550536	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12678622	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12680638	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12681543	0.88[ASN][1000 genomes]
rs12682484	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13248060	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13250282	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13264879	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13274021	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1426297	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17230713	0.90[ASN][1000 genomes]
rs17805787	0.95[ASN][1000 genomes]
rs1820444	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1895892	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1895895	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1898254	0.90[ASN][1000 genomes]
rs2059587	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2080609	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2080610	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2111493	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2114250	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2118059	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2160714	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28802649	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28806247	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28890031	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2892596	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34458961	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35101283	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35442232	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35667758	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36056848	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs36093974	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4467911	0.88[ASN][1000 genomes]
rs4517090	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4641028	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4734711	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734712	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734714	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734716	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734717	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4734719	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61247429	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6468875	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6468883	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs68184585	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6985834	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6988627	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6991802	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6993717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999864	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7001190	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7003727	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7011865	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71520819	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72675499	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72677619	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7813485	0.94[ASN][1000 genomes]
rs7817860	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7824905	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7842405	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7843512	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429931	chr8:104097396-104878014	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv1020476	chr8:104312212-104924482	Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv539704	chr8:104312212-104924482	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv1023048	chr8:104355188-104872701	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv539705	chr8:104355188-104872701	ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
6	nsv1021345	chr8:104361854-104879684	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	nsv1032085	chr8:104362187-104878345	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
8	nsv1034183	chr8:104369940-104814008	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
9	nsv539707	chr8:104369940-104814008	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	esv2753239	chr8:104404824-104545824	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	esv3384862	chr8:104511126-104513424	Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs35745796	RIMS2	cis	Thyroid	GTEx
rs35745796	RP11-1C8.4	cis	Thyroid	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104510400-104514200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:104510400-104514400	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr8:104510400-104514600	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr8:104510400-104514800	Active TSS	H1 Cell Line	embryonic stem cell
5	chr8:104510400-104515000	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr8:104510600-104514200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:104510600-104514200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:104510600-104514200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:104510600-104514200	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr8:104510600-104514400	Active TSS	H9 Cell Line	embryonic stem cell
11	chr8:104510600-104514400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:104510600-104514600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr8:104510600-104514600	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr8:104510600-104514800	Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr8:104510800-104513600	Bivalent/Poised TSS	HSMM	muscle
16	chr8:104510800-104513800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
17	chr8:104510800-104513800	Bivalent Enhancer	Spleen	Spleen
18	chr8:104510800-104514000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:104510800-104514200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr8:104510800-104514200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr8:104510800-104514200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr8:104510800-104514400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:104510800-104515000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr8:104511000-104513600	Active TSS	HepG2	liver
25	chr8:104511000-104515200	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr8:104511400-104513600	Bivalent Enhancer	Placenta	Placenta
27	chr8:104511400-104514200	Active TSS	iPS-20b Cell Line	embryonic stem cell
28	chr8:104511400-104514400	Active TSS	NHDF-Ad	bronchial
29	chr8:104511600-104514000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
30	chr8:104511600-104514200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:104511600-104514200	Active TSS	Right Atrium	heart
32	chr8:104511800-104515600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr8:104512000-104514200	Flanking Active TSS	Pancreas	Pancrea
34	chr8:104512200-104514000	Flanking Bivalent TSS/Enh	Thymus	Thymus
35	chr8:104512200-104514200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
36	chr8:104512400-104513600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
37	chr8:104512400-104513800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
38	chr8:104512400-104513800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
39	chr8:104512400-104514000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr8:104512400-104514000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr8:104512400-104514000	Flanking Bivalent TSS/Enh	Right Ventricle	heart
42	chr8:104512400-104514200	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr8:104512400-104514200	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr8:104512400-104514200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr8:104512400-104514200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
46	chr8:104512600-104513400	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
47	chr8:104512600-104513400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
48	chr8:104512600-104513400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
49	chr8:104512600-104513800	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
50	chr8:104512600-104514000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin

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