Variant report

Variant	rs35746179
Chromosome Location	chr11:49185201-49185202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10742932	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10839233	0.84[ASN][1000 genomes]
rs10839234	0.92[ASN][1000 genomes]
rs10839236	0.89[ASN][1000 genomes]
rs11600305	0.82[ASN][1000 genomes]
rs2299645	0.88[ASN][1000 genomes]
rs2299647	0.88[ASN][1000 genomes]
rs2299648	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2299650	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2988340	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3872563	0.87[ASN][1000 genomes]
rs3974730	0.82[ASN][1000 genomes]
rs4315497	0.83[ASN][1000 genomes]
rs588458	0.84[ASN][1000 genomes]
rs6485965	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9651571	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469956	chr11:48922645-49862647	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv554347	chr11:49111467-49862647	Enhancers Active TSS Strong transcription Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1044070	chr11:49147743-49448774	Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv525454	chr11:49156039-49570587	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv518571	chr11:49162948-49627833	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv975176	chr11:49172737-49186292	Strong transcription Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:49171400-49197600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:49171600-49190800	Weak transcription	Small Intestine	intestine
3	chr11:49176200-49186800	Weak transcription	Ovary	ovary
4	chr11:49183200-49186200	Strong transcription	Liver	Liver
5	chr11:49183400-49190000	Strong transcription	Fetal Intestine Large	intestine
6	chr11:49183800-49185600	Weak transcription	Brain Anterior Caudate	brain
7	chr11:49183800-49186800	Strong transcription	Duodenum Mucosa	Duodenum
8	chr11:49184000-49185600	Strong transcription	Fetal Lung	lung
9	chr11:49184200-49185600	Strong transcription	Brain Hippocampus Middle	brain
10	chr11:49184200-49193400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:49184400-49185600	Strong transcription	Fetal Stomach	stomach
12	chr11:49184400-49186800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr11:49184600-49185600	ZNF genes & repeats	Fetal Intestine Small	intestine
14	chr11:49184800-49208400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr11:49185200-49185600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
16	chr11:49185200-49185600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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