Variant report

Variant	rs35749426
Chromosome Location	chr2:152107719-152107720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:152105316..152108235-chr2:152116830..152118343,2	K562	blood:
2	chr2:152106609..152109235-chr2:152114382..152116321,2	K562	blood:
3	chr2:152107619..152109429-chr2:152322968..152325434,2	K562	blood:

Variant related genes	Relation type
ENSG00000184898	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11901339	1.00[AMR][1000 genomes]
rs35651313	1.00[AMR][1000 genomes]
rs57404056	1.00[AMR][1000 genomes]
rs57949203	1.00[AMR][1000 genomes]
rs6715363	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv834417	chr2:151980473-152154950	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1014936	chr2:152019809-152118479	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv1012891	chr2:152019809-152306897	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	nsv1013484	chr2:152028515-152473913	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv535983	chr2:152028515-152473913	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:152094400-152117000	Weak transcription	A549	lung
2	chr2:152101600-152117200	Weak transcription	Fetal Kidney	kidney
3	chr2:152102000-152116600	Weak transcription	Pancreas	Pancrea
4	chr2:152103400-152117600	Weak transcription	Gastric	stomach
5	chr2:152103800-152117600	Weak transcription	Esophagus	oesophagus
6	chr2:152104400-152107800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:152104400-152117200	Weak transcription	Colonic Mucosa	Colon
8	chr2:152104600-152107800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr2:152104600-152117200	Weak transcription	Stomach Mucosa	stomach
10	chr2:152105200-152109800	Strong transcription	Rectal Mucosa Donor 29	rectum
11	chr2:152105200-152111800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr2:152105400-152107800	Strong transcription	HSMM	muscle
13	chr2:152105800-152108000	Strong transcription	Colon Smooth Muscle	Colon
14	chr2:152105800-152108000	Strong transcription	HSMMtube	muscle
15	chr2:152105800-152108400	Strong transcription	Cortex derived primary cultured neurospheres	brain
16	chr2:152105800-152109400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr2:152105800-152110000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr2:152105800-152110200	Weak transcription	Lung	lung
19	chr2:152105800-152111400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr2:152105800-152112200	Strong transcription	Adipose Nuclei	Adipose
21	chr2:152105800-152112400	Strong transcription	Liver	Liver
22	chr2:152105800-152114600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:152105800-152116800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr2:152105800-152116800	Weak transcription	K562	blood
25	chr2:152105800-152117200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:152105800-152117200	Weak transcription	Brain Cingulate Gyrus	brain
27	chr2:152106000-152107800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr2:152106000-152109000	Strong transcription	Duodenum Mucosa	Duodenum
29	chr2:152106000-152109800	Strong transcription	Primary B cells from peripheral blood	blood
30	chr2:152106000-152111400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr2:152106000-152111400	Strong transcription	Stomach Smooth Muscle	stomach
32	chr2:152106000-152112600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr2:152106200-152108400	Weak transcription	Spleen	Spleen
34	chr2:152106200-152110600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr2:152106400-152107800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr2:152106400-152108200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr2:152106400-152109000	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr2:152106400-152109400	Strong transcription	Fetal Thymus	thymus
39	chr2:152106400-152110400	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr2:152106400-152110400	Strong transcription	Primary hematopoietic stem cells	blood
41	chr2:152106400-152112000	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr2:152106400-152112400	Strong transcription	Primary T cells from cord blood	blood
43	chr2:152106400-152112400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr2:152106400-152113600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr2:152106400-152116800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr2:152106400-152117200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr2:152106400-152117200	Weak transcription	Brain Substantia Nigra	brain
48	chr2:152106400-152117600	Weak transcription	Left Ventricle	heart
49	chr2:152106600-152107800	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr2:152106600-152107800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links