Variant report

Variant	rs35750153
Chromosome Location	chr12:74723932-74723933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:74723847..74726680-chr12:74730834..74733309,2	MCF-7	breast:
2	chr12:74722908..74725146-chr12:74726519..74728134,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11179992	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11179997	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11180001	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12297255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12302817	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12305113	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12306390	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12578377	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1608077	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1608078	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4267148	0.96[ASN][1000 genomes]
rs60261359	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60385205	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61521825	0.81[EUR][1000 genomes]
rs6582211	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7302983	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73350831	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73350843	0.89[ASN][1000 genomes]
rs74105240	0.81[EUR][1000 genomes]
rs7964864	0.89[ASN][1000 genomes]
rs7965997	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039468	chr12:74080586-75000246	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv899290	chr12:74666737-74729489	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv899291	chr12:74666737-74740958	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1051702	chr12:74674733-74732069	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv428595	chr12:74679884-74858160	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv523765	chr12:74680999-74749476	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1052996	chr12:74710909-74891621	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv541540	chr12:74710909-74891621	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:74722600-74728600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:74723400-74724400	Weak transcription	A549	lung

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