Variant report

Variant	rs35752010
Chromosome Location	chr3:23935050-23935051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:23930170..23932162-chr3:23932484..23935358,2	K562	blood:
2	chr3:23934601..23938770-chr3:23957665..23961115,6	MCF-7	breast:
3	chr3:23927429..23929219-chr3:23934294..23936839,2	K562	blood:
4	chr3:23930243..23932089-chr3:23933446..23935951,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction
ENSG00000197885	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs34200392	0.81[AFR][1000 genomes]
rs34391207	0.81[AFR][1000 genomes]
rs34869095	0.84[AFR][1000 genomes]
rs34927065	1.00[AFR][1000 genomes]
rs34993633	0.81[AFR][1000 genomes]
rs35569243	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23901200-23942000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:23901800-23935600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr3:23907600-23940200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:23908000-23935600	Weak transcription	Fetal Kidney	kidney
5	chr3:23908000-23935600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:23908000-23940200	Weak transcription	Gastric	stomach
7	chr3:23916000-23950200	Weak transcription	Aorta	Aorta
8	chr3:23916200-23948800	Weak transcription	Colonic Mucosa	Colon
9	chr3:23919000-23940000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:23919200-23935800	Weak transcription	Psoas Muscle	Psoas
11	chr3:23919200-23938400	Weak transcription	Ovary	ovary
12	chr3:23919200-23940200	Weak transcription	Pancreas	Pancrea
13	chr3:23919600-23935400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr3:23920000-23939000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:23920200-23935800	Weak transcription	Brain Germinal Matrix	brain
16	chr3:23920200-23935800	Weak transcription	Right Atrium	heart
17	chr3:23920800-23940200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:23922400-23956600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr3:23922600-23936000	Weak transcription	Right Ventricle	heart
20	chr3:23922600-23940000	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:23923000-23956600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr3:23923400-23955200	Weak transcription	Thymus	Thymus
23	chr3:23923400-23957000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:23923600-23956800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:23924000-23939000	Weak transcription	Fetal Brain Male	brain
26	chr3:23924200-23957800	Weak transcription	Esophagus	oesophagus
27	chr3:23924200-23957800	Weak transcription	Lung	lung
28	chr3:23924400-23935600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:23924400-23940200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr3:23924600-23936000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr3:23924600-23940000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:23924600-23940200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr3:23925000-23936000	Weak transcription	Spleen	Spleen
34	chr3:23925000-23940200	Weak transcription	Fetal Brain Female	brain
35	chr3:23925800-23937200	Strong transcription	GM12878-XiMat	blood
36	chr3:23928000-23935600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr3:23928000-23957200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr3:23928200-23939800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:23928800-23956000	Weak transcription	Small Intestine	intestine
40	chr3:23928800-23957400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr3:23929000-23937400	Strong transcription	Fetal Intestine Large	intestine
42	chr3:23929000-23956600	Weak transcription	Rectal Smooth Muscle	rectum
43	chr3:23929400-23937200	Strong transcription	Dnd41	blood
44	chr3:23929800-23944200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:23930000-23936000	Enhancers	Primary neutrophils fromperipheralblood	blood
46	chr3:23930200-23936000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr3:23930600-23935600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr3:23930600-23945800	Weak transcription	Fetal Heart	heart
49	chr3:23930800-23935800	Weak transcription	Brain Angular Gyrus	brain
50	chr3:23930800-23937600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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