Variant report

Variant	rs35754287
Chromosome Location	chr5:179305405-179305406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11956186	1.00[EUR][1000 genomes]
rs17079774	1.00[EUR][1000 genomes]
rs269469	1.00[EUR][1000 genomes]
rs269470	1.00[EUR][1000 genomes]
rs269472	1.00[EUR][1000 genomes]
rs270329	1.00[EUR][1000 genomes]
rs270332	1.00[EUR][1000 genomes]
rs384668	1.00[EUR][1000 genomes]
rs390256	1.00[EUR][1000 genomes]
rs393065	1.00[EUR][1000 genomes]
rs407437	1.00[EUR][1000 genomes]
rs460899	1.00[EUR][1000 genomes]
rs61160471	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949554	chr5:178832325-179309513	Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
2	nsv883270	chr5:178951106-179350387	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
3	nsv531997	chr5:179107599-179588082	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	339 gene(s)	inside rSNPs	diseases
4	nsv469579	chr5:179184831-179360191	Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
5	nsv883274	chr5:179186397-179310330	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv883276	chr5:179193598-179310330	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
7	nsv883277	chr5:179193598-179350387	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
8	nsv1030437	chr5:179235423-179649944	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	189 gene(s)	inside rSNPs	diseases
9	nsv537982	chr5:179235423-179649944	Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	189 gene(s)	inside rSNPs	diseases
10	nsv948909	chr5:179249099-179772640	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
11	nsv883286	chr5:179290845-179313656	ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179286200-179310600	Weak transcription	Stomach Mucosa	stomach
2	chr5:179286600-179310600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr5:179286600-179310800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:179286600-179311400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:179287200-179333600	Weak transcription	Right Atrium	heart
6	chr5:179287800-179310000	Weak transcription	Fetal Brain Male	brain
7	chr5:179288400-179308400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:179288400-179308400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:179288400-179310600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:179289000-179306800	Strong transcription	Placenta Amnion	Placenta Amnion
11	chr5:179289000-179307000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:179289000-179308800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:179289000-179309200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:179289200-179307000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr5:179289200-179307800	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr5:179289200-179308600	Strong transcription	Liver	Liver
17	chr5:179289200-179308600	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:179289200-179308800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:179289200-179309200	Strong transcription	Fetal Brain Female	brain
20	chr5:179289400-179306800	Strong transcription	HUES6 Cell Line	embryonic stem cell
21	chr5:179289400-179307400	Strong transcription	Primary T cells from cord blood	blood
22	chr5:179289400-179307600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr5:179289400-179308200	Strong transcription	Dnd41	blood
24	chr5:179289400-179308400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:179289400-179308400	Strong transcription	Ovary	ovary
26	chr5:179289400-179308400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr5:179289400-179308400	Strong transcription	Thymus	Thymus
28	chr5:179289400-179309400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:179289600-179308800	Strong transcription	Brain Germinal Matrix	brain
30	chr5:179289600-179328000	Strong transcription	Adipose Nuclei	Adipose
31	chr5:179289800-179306800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr5:179289800-179308400	Strong transcription	Lung	lung
33	chr5:179290200-179307800	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr5:179290200-179308600	Strong transcription	Fetal Intestine Small	intestine
35	chr5:179290400-179308800	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr5:179290400-179309600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr5:179291000-179308400	Strong transcription	Fetal Intestine Large	intestine
38	chr5:179291200-179308600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr5:179292800-179306400	Strong transcription	Brain Cingulate Gyrus	brain
40	chr5:179292800-179308400	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr5:179293400-179307600	Strong transcription	Brain Angular Gyrus	brain
42	chr5:179293600-179309000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr5:179293600-179309000	Strong transcription	Placenta	Placenta
44	chr5:179293800-179309400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr5:179294000-179308400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr5:179295000-179309200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr5:179295200-179334000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr5:179295400-179308200	Strong transcription	Primary T cells fromperipheralblood	blood
49	chr5:179295400-179309000	Strong transcription	Duodenum Mucosa	Duodenum
50	chr5:179296000-179308400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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