Variant report

Variant	rs35755371
Chromosome Location	chr3:48540149-48540150
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:48538484..48541127-chr3:48554924..48556853,2	MCF-7	breast:
2	chr3:48519627..48521356-chr3:48540019..48542840,2	MCF-7	breast:
3	chr3:48512987..48515121-chr3:48538907..48542764,4	MCF-7	breast:
4	chr3:48539095..48541147-chr3:48593832..48595343,2	MCF-7	breast:
5	chr3:48538275..48540635-chr3:48541463..48544439,2	K562	blood:
6	chr3:48504031..48516338-chr3:48532689..48546353,31	MCF-7	breast:
7	chr3:48506549..48509845-chr3:48539899..48542681,4	MCF-7	breast:
8	chr3:48511787..48515469-chr3:48539737..48543035,4	K562	blood:
9	chr3:48481573..48483213-chr3:48538855..48541265,2	MCF-7	breast:
10	chr3:48540047..48541842-chr3:48700022..48702495,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000213689	Chromatin interaction
ENSG00000114268	Chromatin interaction
ENSG00000008300	Chromatin interaction
ENSG00000164051	Chromatin interaction
ENSG00000164054	Chromatin interaction
ENSG00000228350	Chromatin interaction
ENSG00000232112	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13063742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13069446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73078349	1.00[AFR][1000 genomes]
rs73078362	1.00[AFR][1000 genomes]
rs9862906	0.88[EUR][1000 genomes]
rs9875911	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834684	chr3:48385699-48589323	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv590242	chr3:48433635-48556339	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	esv1802114	chr3:48498822-48577670	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1008232	chr3:48517121-48702416	Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv523981	chr3:48520289-48721040	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:48514800-48541000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:48515000-48540200	Weak transcription	NHDF-Ad	bronchial
3	chr3:48515000-48540400	Weak transcription	HSMM	muscle
4	chr3:48515000-48541000	Weak transcription	Aorta	Aorta
5	chr3:48515200-48540200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:48515200-48540200	Weak transcription	HUVEC	blood vessel
7	chr3:48515200-48540400	Weak transcription	Fetal Brain Female	brain
8	chr3:48515200-48540600	Weak transcription	Brain Germinal Matrix	brain
9	chr3:48515200-48540600	Weak transcription	Fetal Lung	lung
10	chr3:48517200-48540400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:48517200-48540400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr3:48519600-48540200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:48526600-48540200	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:48530800-48540400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:48531000-48540600	Weak transcription	A549	lung
16	chr3:48532200-48540200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:48532400-48540200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:48533200-48541200	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:48533400-48540200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:48533400-48540600	Weak transcription	Primary B cells from peripheral blood	blood
21	chr3:48534000-48540200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr3:48534200-48540400	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr3:48534400-48540200	Weak transcription	NH-A	brain
24	chr3:48535200-48540600	Weak transcription	Primary T cells from cord blood	blood
25	chr3:48536000-48540200	Weak transcription	Liver	Liver
26	chr3:48536000-48540200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:48536000-48540400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:48536000-48540400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:48536200-48540200	Weak transcription	Fetal Intestine Large	intestine
30	chr3:48537000-48540600	Weak transcription	HSMMtube	muscle
31	chr3:48537800-48540200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr3:48538000-48540200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:48538600-48540200	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr3:48538600-48540200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:48538600-48540400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr3:48538600-48540400	Weak transcription	Ovary	ovary
37	chr3:48538600-48540800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr3:48538800-48540200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr3:48538800-48540200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr3:48538800-48540200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr3:48538800-48540400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr3:48538800-48540400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
43	chr3:48538800-48540600	Weak transcription	Hela-S3	cervix
44	chr3:48538800-48540800	Enhancers	Placenta	Placenta
45	chr3:48538800-48541000	Enhancers	Gastric	stomach
46	chr3:48539000-48540200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr3:48539000-48540200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr3:48539000-48540200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr3:48539000-48540200	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr3:48539000-48540200	Enhancers	Brain Cingulate Gyrus	brain

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