Variant report

Variant	rs35756704
Chromosome Location	chr3:49486287-49486288
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:49332759..49333392-chr3:49486167..49486735,2	K562	blood:
2	chr3:49377695..49378714-chr3:49486236..49487281,5	K562	blood:
3	chr3:49364654..49365530-chr3:49486261..49487148,2	K562	blood:
4	chr3:49452694..49453465-chr3:49486179..49487146,3	MCF-7	breast:
5	chr3:49208204..49208846-chr3:49486196..49487422,4	K562	blood:

Variant related genes	Relation type
ENSG00000114316	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34306352	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56275140	1.00[AMR][1000 genomes]
rs71324963	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834687	chr3:49448632-49631788	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv963482	chr3:49459177-49486938	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3381415	chr3:49485532-49486309	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49467400-49486400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:49481600-49486400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:49481600-49486400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:49481600-49486400	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:49481600-49486400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:49481600-49486400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:49481600-49486400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:49481600-49486400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:49481600-49486400	Weak transcription	HUVEC	blood vessel
10	chr3:49481600-49486400	Weak transcription	NHDF-Ad	bronchial
11	chr3:49481600-49486400	Weak transcription	NHEK	skin
12	chr3:49481800-49486400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:49481800-49486400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:49481800-49486400	Weak transcription	K562	blood
15	chr3:49481800-49486400	Weak transcription	Osteobl	bone
16	chr3:49481800-49492400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr3:49482000-49486400	Weak transcription	Adipose Nuclei	Adipose
18	chr3:49482000-49486400	Weak transcription	Fetal Muscle Leg	muscle
19	chr3:49482000-49498200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:49482200-49486400	Weak transcription	Thymus	Thymus
21	chr3:49482400-49486400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr3:49482400-49486400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:49482400-49486400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr3:49482400-49486400	Weak transcription	Fetal Thymus	thymus
25	chr3:49482400-49486400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:49482600-49486400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr3:49482600-49486400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:49482600-49486400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr3:49482600-49486400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr3:49482600-49486400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr3:49482600-49486400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:49482600-49486400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr3:49482600-49486400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr3:49482600-49486400	Weak transcription	GM12878-XiMat	blood
35	chr3:49482800-49486400	Weak transcription	Primary B cells from peripheral blood	blood
36	chr3:49483000-49486400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr3:49483000-49486400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr3:49484400-49486400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr3:49484400-49486400	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr3:49484400-49486400	Weak transcription	Primary B cells from cord blood	blood
41	chr3:49484400-49486400	Weak transcription	Hela-S3	cervix
42	chr3:49484400-49486400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr3:49484600-49492400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr3:49486200-49486400	Enhancers	Dnd41	blood
45	chr3:49486200-49486800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links