Variant report

Variant	rs35757511
Chromosome Location	chr4:111060495-111060496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:111046771..111053341-chr4:111055463..111062117,9	K562	blood:
2	chr4:111060292..111062411-chr4:111065493..111067914,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000248200	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12504798	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12512099	0.85[AMR][1000 genomes]
rs12649452	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111026000-111061000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:111030000-111060800	Weak transcription	A549	lung
3	chr4:111030000-111093800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:111030000-111098800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:111031800-111066200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:111040400-111066800	Weak transcription	Esophagus	oesophagus
7	chr4:111041800-111070600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:111042000-111080200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:111042000-111084200	Weak transcription	NHLF	lung
10	chr4:111042800-111065200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:111049600-111067200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:111050200-111086600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr4:111051400-111061600	Enhancers	Fetal Intestine Large	intestine
14	chr4:111052200-111063600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:111052600-111067200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:111053000-111061200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr4:111053200-111063600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:111053200-111075200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:111054000-111069000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:111054000-111069600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:111054800-111079400	Weak transcription	HMEC	breast
22	chr4:111055600-111060600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:111055600-111060800	Weak transcription	Small Intestine	intestine
24	chr4:111056000-111061200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr4:111056600-111063600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:111056800-111061000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:111056800-111063800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:111056800-111063800	Weak transcription	HepG2	liver
29	chr4:111056800-111070000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:111056800-111080200	Weak transcription	NHDF-Ad	bronchial
31	chr4:111057000-111061000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr4:111057000-111062800	Weak transcription	Brain Angular Gyrus	brain
33	chr4:111057000-111065800	Weak transcription	Dnd41	blood
34	chr4:111057000-111070400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr4:111057000-111070400	Weak transcription	NHEK	skin
36	chr4:111057000-111077000	Weak transcription	Osteobl	bone
37	chr4:111057200-111082600	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr4:111057800-111063600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr4:111058000-111063600	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr4:111058000-111067000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr4:111058800-111061000	Strong transcription	K562	blood
42	chr4:111058800-111062600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:111059200-111061800	Enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr4:111059400-111061400	Enhancers	Primary hematopoietic stem cells	blood
45	chr4:111059600-111061800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr4:111059800-111060600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr4:111059800-111060800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:111060000-111061000	Weak transcription	Ovary	ovary
49	chr4:111060200-111060600	Weak transcription	Fetal Intestine Small	intestine
50	chr4:111060200-111060600	Weak transcription	Fetal Muscle Leg	muscle

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