Variant report

Variant	rs35761479
Chromosome Location	chr1:154154194-154154195
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:154151605..154157694-chr1:154191153..154195788,18	MCF-7	breast:
2	chr1:154140357..154146704-chr1:154153646..154156969,7	MCF-7	breast:
3	chr1:154153295..154155841-chr1:154244913..154246544,2	MCF-7	breast:
4	chr1:154139117..154140929-chr1:154152481..154154257,2	MCF-7	breast:
5	chr1:154152596..154154922-chr1:154174225..154175746,2	MCF-7	breast:
6	chr1:154153141..154174161-chr1:154187746..154196033,47	MCF-7	breast:
7	chr1:153961881..153966027-chr1:154151379..154156773,10	MCF-7	breast:
8	chr1:154145134..154153289-chr1:154153487..154160631,22	K562	blood:
9	chr1:154153643..154157449-chr1:154190048..154195510,8	K562	blood:
10	chr1:153936098..153938705-chr1:154152746..154155431,3	MCF-7	breast:
11	chr1:154127794..154129352-chr1:154153718..154155371,2	K562	blood:
12	chr1:153940285..153941977-chr1:154154150..154156390,2	MCF-7	breast:
13	chr1:153948325..153950818-chr1:154153014..154155918,2	MCF-7	breast:
14	chr1:154152910..154155985-chr1:154176488..154179732,3	K562	blood:
15	chr1:153961745..153965852-chr1:154153352..154156776,9	K562	blood:
16	chr1:153966341..153968649-chr1:154153580..154156511,2	K562	blood:
17	chr1:153917479..153920688-chr1:154153090..154156398,3	MCF-7	breast:
18	chr1:154149113..154161877-chr1:154185436..154196776,24	K562	blood:
19	chr1:154153345..154155827-chr1:154177952..154179974,2	K562	blood:
20	chr1:153961765..153965852-chr1:154152407..154156955,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000177954	Chromatin interaction
ENSG00000272654	Chromatin interaction
ENSG00000231416	Chromatin interaction
ENSG00000143569	Chromatin interaction
ENSG00000143543	Chromatin interaction
ENSG00000198837	Chromatin interaction
ENSG00000143612	Chromatin interaction
ENSG00000143578	Chromatin interaction
ENSG00000143549	Chromatin interaction
ENSG00000143575	Chromatin interaction
ENSG00000163263	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11265238	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11802893	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12025237	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12026177	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12026615	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12027999	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12028949	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12038362	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12733060	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12738393	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12745098	0.92[ASN][1000 genomes]
rs16835846	0.84[EUR][1000 genomes]
rs16835852	0.84[EUR][1000 genomes]
rs2274993	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28372838	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34128679	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34335016	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3762340	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3790613	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3790614	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3811453	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3811455	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3828077	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3935419	0.87[EUR][1000 genomes]
rs4433384	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4620534	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60282844	0.84[EUR][1000 genomes]
rs6673752	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6676022	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999364	chr1:153622634-154419436	Strong transcription Genic enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
2	nsv535175	chr1:153622634-154419436	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	286 gene(s)	inside rSNPs	diseases
3	nsv532551	chr1:153732039-154192279	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
4	esv1830240	chr1:153885261-154370938	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	239 gene(s)	inside rSNPs	diseases
5	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
6	nsv1000402	chr1:153991106-154527053	Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	106 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154144200-154154400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:154148600-154154400	Enhancers	Brain Angular Gyrus	brain
3	chr1:154148600-154155000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr1:154148800-154154400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:154149400-154154400	Enhancers	Spleen	Spleen
6	chr1:154149800-154154600	Enhancers	Fetal Heart	heart
7	chr1:154150200-154154400	Enhancers	Fetal Brain Male	brain
8	chr1:154151200-154154800	Flanking Active TSS	Duodenum Mucosa	Duodenum
9	chr1:154151400-154154800	Transcr. at gene 5' and 3'	Dnd41	blood
10	chr1:154151600-154156400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:154151800-154154800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr1:154152000-154154400	Weak transcription	Aorta	Aorta
13	chr1:154152000-154155400	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr1:154152400-154156600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:154152600-154154200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr1:154152600-154154200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
17	chr1:154152600-154154600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:154152600-154154800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
19	chr1:154152600-154154800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
20	chr1:154152800-154155200	Flanking Active TSS	Primary B cells from cord blood	blood
21	chr1:154152800-154156600	Active TSS	H9 Cell Line	embryonic stem cell
22	chr1:154153000-154154200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr1:154153000-154154400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr1:154153000-154154400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:154153000-154154400	Weak transcription	Gastric	stomach
26	chr1:154153000-154154400	Enhancers	Stomach Mucosa	stomach
27	chr1:154153000-154154600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr1:154153200-154154200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
29	chr1:154153200-154154400	Weak transcription	Lung	lung
30	chr1:154153200-154154400	Weak transcription	Ovary	ovary
31	chr1:154153200-154154600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:154153400-154154200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr1:154153400-154154200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr1:154153400-154154200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:154153400-154154200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:154153400-154154200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr1:154153400-154154200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr1:154153400-154154200	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr1:154153400-154154200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr1:154153400-154154200	Flanking Active TSS	Brain Anterior Caudate	brain
41	chr1:154153400-154154200	Flanking Active TSS	Fetal Intestine Small	intestine
42	chr1:154153400-154154200	Enhancers	Fetal Kidney	kidney
43	chr1:154153400-154154200	Transcr. at gene 5' and 3'	K562	blood
44	chr1:154153400-154154200	Flanking Active TSS	NH-A	brain
45	chr1:154153400-154154200	Flanking Active TSS	Osteobl	bone
46	chr1:154153400-154154400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:154153400-154154400	Weak transcription	Esophagus	oesophagus
48	chr1:154153400-154154600	Flanking Active TSS	Primary T cells from cord blood	blood
49	chr1:154153400-154154800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:154153400-154154800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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