Variant report

Variant	rs35763160
Chromosome Location	chr11:18802707-18802708
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12575115	0.80[ASN][1000 genomes]
rs4073915	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4265582	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56268487	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56295396	0.80[ASN][1000 genomes]
rs7121896	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7129580	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs35763160	PTPN5	cis	Esophagus Muscularis	GTEx
rs35763160	PTPN5	cis	Stomach	GTEx
rs35763160	PTPN5	cis	Thyroid	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18784000-18808000	Weak transcription	Fetal Brain Female	brain
2	chr11:18790800-18811400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:18793600-18809000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:18794600-18811800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:18795400-18804600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:18796400-18812400	Weak transcription	Right Atrium	heart
7	chr11:18802200-18811800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:18802600-18804400	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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