Variant report

Variant	rs35767548
Chromosome Location	chr8:119924883-119924884
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119914374..119916588-chr8:119923602..119925267,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11573823	1.00[ASN][1000 genomes]
rs11573846	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11573847	1.00[ASN][1000 genomes]
rs11573878	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573884	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573888	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573898	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573909	1.00[ASN][1000 genomes]
rs11573916	1.00[ASN][1000 genomes]
rs11573926	1.00[ASN][1000 genomes]
rs11573927	1.00[ASN][1000 genomes]
rs11573935	1.00[ASN][1000 genomes]
rs11573938	1.00[ASN][1000 genomes]
rs11573953	1.00[ASN][1000 genomes]
rs1385502	1.00[ASN][1000 genomes]
rs1564857	1.00[ASN][1000 genomes]
rs1564858	1.00[ASN][1000 genomes]
rs2228568	1.00[ASN][1000 genomes]
rs6469783	1.00[ASN][1000 genomes]
rs6469784	1.00[ASN][1000 genomes]
rs6995365	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7844539	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2308898	chr8:119924621-119925050	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3362867	chr8:119924761-119924922	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119918600-119926600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:119920600-119929200	Enhancers	HSMM	muscle
3	chr8:119921000-119927000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:119921200-119927200	Enhancers	NHDF-Ad	bronchial
5	chr8:119921200-119929000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:119921400-119927000	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:119921600-119926800	Enhancers	HSMMtube	muscle
8	chr8:119921800-119927000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:119921800-119927000	Enhancers	Osteobl	bone
10	chr8:119922000-119926800	Enhancers	NHLF	lung
11	chr8:119922200-119926000	Enhancers	NH-A	brain
12	chr8:119922400-119927000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:119923000-119925200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:119923000-119925200	Weak transcription	Hela-S3	cervix
15	chr8:119923200-119925000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:119923200-119925800	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr8:119923200-119926400	Weak transcription	NHEK	skin
18	chr8:119923600-119925000	Weak transcription	HMEC	breast
19	chr8:119923600-119928200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr8:119924600-119926000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:119924800-119925600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:119924800-119925800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr8:119924800-119926800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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