Variant report

Variant	rs35767652
Chromosome Location	chr14:39603200-39603201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:39602771..39604896-chr14:39637781..39640211,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182400	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs12882909	0.80[ASN][1000 genomes]
rs12883114	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12896963	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12897381	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12897593	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17616347	0.80[ASN][1000 genomes]
rs17617123	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17617289	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17679493	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1884383	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1950508	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1980611	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1980612	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1980613	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2038359	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2038360	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2273315	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2415533	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2753596	0.95[ASN][1000 genomes]
rs28364834	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34328534	0.80[ASN][1000 genomes]
rs35006421	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35114880	0.97[ASN][1000 genomes]
rs35270180	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35395604	0.80[ASN][1000 genomes]
rs35412542	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35502984	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35534904	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs36057038	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55902358	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55993688	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs57550673	0.81[EUR][1000 genomes]
rs59881143	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60085216	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66488055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67190795	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs67849341	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67968129	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7140282	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7140321	0.97[ASN][1000 genomes]
rs7145712	0.80[ASN][1000 genomes]
rs7152392	0.80[ASN][1000 genomes]
rs715267	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7157774	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72673356	0.82[ASN][1000 genomes]
rs8007028	0.80[ASN][1000 genomes]
rs8007240	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8008726	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8011244	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8011494	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8020321	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8022864	0.83[ASN][1000 genomes]
rs9743466	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9743749	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3429206	chr14:39160730-39648836	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv1038622	chr14:39423562-39604035	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv3340792	chr14:39601226-39603774	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3431456	chr14:39601526-39603549	Weak transcription Strong transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39583800-39626000	Weak transcription	Spleen	Spleen
2	chr14:39584000-39615000	Weak transcription	Pancreas	Pancrea
3	chr14:39584000-39623600	Weak transcription	Esophagus	oesophagus
4	chr14:39584200-39610800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:39584200-39636000	Weak transcription	Small Intestine	intestine
6	chr14:39584200-39638600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:39584400-39617200	Weak transcription	Psoas Muscle	Psoas
8	chr14:39584400-39620800	Weak transcription	Colonic Mucosa	Colon
9	chr14:39584400-39626600	Weak transcription	Aorta	Aorta
10	chr14:39584600-39603600	Weak transcription	K562	blood
11	chr14:39584600-39604600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:39584600-39609600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:39584600-39625800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:39585200-39608200	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:39585800-39608200	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr14:39586000-39608000	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:39586000-39608400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr14:39586000-39608600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:39586000-39608800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:39586600-39610600	Strong transcription	HepG2	liver
21	chr14:39587200-39609600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr14:39587400-39608400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr14:39587600-39607800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr14:39588600-39635400	Weak transcription	Fetal Brain Male	brain
25	chr14:39589200-39604800	Weak transcription	HSMMtube	muscle
26	chr14:39589200-39609200	Weak transcription	Gastric	stomach
27	chr14:39589200-39610000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr14:39589200-39618000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:39589200-39626400	Weak transcription	Fetal Heart	heart
30	chr14:39591800-39606600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr14:39592400-39603600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr14:39592600-39603800	Weak transcription	NHDF-Ad	bronchial
33	chr14:39592600-39605200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:39592600-39622200	Weak transcription	Right Ventricle	heart
35	chr14:39592800-39603800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr14:39592800-39606600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr14:39592800-39607400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr14:39592800-39618000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr14:39592800-39626600	Weak transcription	NHLF	lung
40	chr14:39593400-39604800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr14:39593600-39603200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr14:39594000-39620800	Weak transcription	Hela-S3	cervix
43	chr14:39594600-39606600	Weak transcription	Fetal Kidney	kidney
44	chr14:39594800-39608000	Weak transcription	Brain Angular Gyrus	brain
45	chr14:39596200-39621200	Weak transcription	Brain Substantia Nigra	brain
46	chr14:39596400-39607400	Weak transcription	Brain Anterior Caudate	brain
47	chr14:39596800-39608200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr14:39596800-39608600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr14:39597200-39608000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
50	chr14:39597400-39608200	Strong transcription	iPS-20b Cell Line	embryonic stem cell

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