Variant report

Variant	rs35768013
Chromosome Location	chr8:99370406-99370407
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:99308262..99310290-chr8:99370211..99371951,2	MCF-7	breast:
2	chr8:99370393..99370939-chr8:99483098..99483860,2	MCF-7	breast:
3	chr8:99176613..99177756-chr8:99370117..99370793,5	MCF-7	breast:
4	chr8:99304623..99310031-chr8:99366806..99371417,6	MCF-7	breast:
5	chr8:99364130..99368810-chr8:99369067..99373271,6	MCF-7	breast:
6	chr8:99182957..99185406-chr8:99368806..99370726,2	MCF-7	breast:
7	chr8:99370198..99371332-chr8:99389795..99390645,3	MCF-7	breast:
8	chr8:99182291..99182886-chr8:99370098..99370931,3	MCF-7	breast:
9	chr8:99356606..99360601-chr8:99368413..99371833,4	MCF-7	breast:
10	chr8:99369995..99370981-chr8:99483040..99484080,8	MCF-7	breast:
11	chr8:99340871..99341482-chr8:99370235..99370905,2	MCF-7	breast:
12	chr8:99224537..99225066-chr8:99370073..99370984,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104361	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13273214	0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16896927	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28731215	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6986322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6987159	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6987414	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6989037	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7006634	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7008701	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7842811	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843228	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843256	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv831406	chr8:99290745-99482076	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv891217	chr8:99346537-99391285	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99363600-99373800	Weak transcription	Pancreas	Pancrea
2	chr8:99367400-99377000	Enhancers	Fetal Lung	lung
3	chr8:99368000-99370800	Enhancers	Fetal Stomach	stomach
4	chr8:99368000-99371000	Enhancers	Ovary	ovary
5	chr8:99368200-99370600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:99368200-99370600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:99368200-99371200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:99368200-99372600	Enhancers	NHDF-Ad	bronchial
9	chr8:99368400-99370800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:99368400-99371200	Enhancers	Fetal Muscle Leg	muscle
11	chr8:99369000-99371400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:99369400-99371200	Enhancers	Fetal Muscle Trunk	muscle
13	chr8:99369600-99371000	Enhancers	Lung	lung
14	chr8:99369600-99371200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:99369800-99370600	Enhancers	NHLF	lung
16	chr8:99369800-99373400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:99370000-99370600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:99370200-99370600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr8:99370200-99370600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:99370200-99371000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
21	chr8:99370200-99371000	Enhancers	Right Atrium	heart
22	chr8:99370200-99371200	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr8:99370400-99370600	Active TSS	A549	lung
24	chr8:99370400-99370600	Active TSS	Hela-S3	cervix
25	chr8:99370400-99370600	Active TSS	HepG2	liver
26	chr8:99370400-99370600	Enhancers	HUVEC	blood vessel
27	chr8:99370400-99370800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:99370400-99370800	Enhancers	Gastric	stomach
29	chr8:99370400-99370800	Enhancers	K562	blood
30	chr8:99370400-99370800	Enhancers	NH-A	brain
31	chr8:99370400-99371000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr8:99370400-99371000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr8:99370400-99371000	Enhancers	Esophagus	oesophagus
34	chr8:99370400-99371000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr8:99370400-99371000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr8:99370400-99371000	Enhancers	Stomach Smooth Muscle	stomach
37	chr8:99370400-99371000	Flanking Active TSS	NHEK	skin
38	chr8:99370400-99371200	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr8:99370400-99371400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr8:99370400-99371400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr8:99370400-99371400	Enhancers	Placenta	Placenta
42	chr8:99370400-99371400	Enhancers	Placenta Amnion	Placenta Amnion
43	chr8:99370400-99371400	Enhancers	HMEC	breast
44	chr8:99370400-99371400	Flanking Active TSS	Osteobl	bone
45	chr8:99370400-99372600	Enhancers	Left Ventricle	heart

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