Variant report

Variant	rs35778743
Chromosome Location	chr2:212589986-212589987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11679952	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13022529	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3923054	1.00[ASN][1000 genomes]
rs55951977	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71422756	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212569400-212590800	Weak transcription	Fetal Kidney	kidney
2	chr2:212569600-212591800	Weak transcription	Fetal Heart	heart
3	chr2:212571200-212594800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:212575600-212592000	Weak transcription	Aorta	Aorta
5	chr2:212583600-212595400	Weak transcription	Brain Anterior Caudate	brain
6	chr2:212586200-212590800	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:212587400-212595000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr2:212589600-212590000	Flanking Active TSS	Brain Substantia Nigra	brain
9	chr2:212589800-212590000	Enhancers	Brain Angular Gyrus	brain
10	chr2:212589800-212590000	Enhancers	Left Ventricle	heart
11	chr2:212589800-212590400	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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