Variant report

Variant	rs35780256
Chromosome Location	chr13:94051701-94051702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr13:94051581-94052064	A549	lung:	n/a	chr13:94051856-94051865 chr13:94051858-94051869 chr13:94051855-94051866
2	FOS	chr13:94051694-94052024	MCF10A-Er-Src	breast:	n/a	chr13:94051856-94051865 chr13:94051858-94051869 chr13:94051855-94051866
3	FOXA2	chr13:94051658-94052136	A549	lung:	n/a	n/a
4	FOXA2	chr13:94051626-94052103	A549	lung:	n/a	n/a

Variant related genes	Relation type
HNRNPA1P29	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10507999	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12856377	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12859238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12865978	0.97[EUR][1000 genomes]
rs12877939	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1408212	0.97[EUR][1000 genomes]
rs1408213	0.92[EUR][1000 genomes]
rs1408214	0.97[EUR][1000 genomes]
rs17188928	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17267690	1.00[AFR][1000 genomes]
rs34144741	1.00[AFR][1000 genomes]
rs34193955	0.97[EUR][1000 genomes]
rs34377625	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34448529	0.97[EUR][1000 genomes]
rs35510443	1.00[AFR][1000 genomes]
rs66470909	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67774598	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67862730	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72639050	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7323858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7337108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7991595	0.97[EUR][1000 genomes]
rs7992198	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94046600-94052400	Weak transcription	Fetal Brain Male	brain
2	chr13:94047800-94057200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr13:94050200-94051800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:94050600-94052000	Enhancers	A549	lung
5	chr13:94050800-94053000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:94051200-94052200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:94051200-94052200	Enhancers	HepG2	liver
8	chr13:94051600-94051800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:94051600-94052200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr13:94051600-94055600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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