Variant report

Variant	rs35786644
Chromosome Location	chr4:186635510-186635511
allele	AT/GG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10015763	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10016122	0.82[ASN][1000 genomes]
rs10019263	0.82[ASN][1000 genomes]
rs11132336	0.85[ASN][1000 genomes]
rs11132337	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11725010	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11733264	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11932587	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11937510	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs11941721	0.85[ASN][1000 genomes]
rs12640689	0.83[ASN][1000 genomes]
rs12643220	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs12649216	0.85[ASN][1000 genomes]
rs1566351	0.83[ASN][1000 genomes]
rs1566352	0.80[ASN][1000 genomes]
rs1566353	0.81[ASN][1000 genomes]
rs2030143	0.81[ASN][1000 genomes]
rs4861677	0.84[ASN][1000 genomes]
rs4861678	0.82[ASN][1000 genomes]
rs4861679	0.84[ASN][1000 genomes]
rs6812761	0.85[ASN][1000 genomes]
rs6820044	0.82[ASN][1000 genomes]
rs6825114	0.82[ASN][1000 genomes]
rs6825669	0.82[ASN][1000 genomes]
rs6826210	0.82[ASN][1000 genomes]
rs7673413	0.83[ASN][1000 genomes]
rs7689859	0.83[ASN][1000 genomes]
rs7690098	0.84[ASN][1000 genomes]
rs7695346	0.82[ASN][1000 genomes]
rs9991426	0.82[ASN][1000 genomes]
rs9991548	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432684	chr4:186412851-186742851	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv830169	chr4:186455064-186638163	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1028146	chr4:186503899-187338335	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv1020731	chr4:186512433-186724031	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1023917	chr4:186533075-186997806	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv537420	chr4:186533075-186997806	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv830171	chr4:186610113-186789271	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1023412	chr4:186613289-186707428	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv537421	chr4:186613289-186707428	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv427702	chr4:186618031-186782377	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:186622000-186651800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:186622600-186637200	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:186627200-186639800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr4:186628200-186637600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr4:186630000-186651600	Weak transcription	HSMM	muscle
6	chr4:186631200-186638200	Weak transcription	HSMMtube	muscle
7	chr4:186631800-186635600	Enhancers	Right Ventricle	heart
8	chr4:186632000-186637200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:186632200-186639800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:186632600-186637200	Weak transcription	Fetal Brain Male	brain
11	chr4:186632800-186636200	Enhancers	Fetal Intestine Large	intestine
12	chr4:186632800-186636600	Enhancers	Fetal Intestine Small	intestine
13	chr4:186632800-186637000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:186632800-186637200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:186632800-186637400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:186633000-186636000	Enhancers	Pancreas	Pancrea
17	chr4:186633000-186642000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:186633400-186640000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:186634000-186637400	Weak transcription	Spleen	Spleen
20	chr4:186634000-186641600	Weak transcription	Fetal Stomach	stomach
21	chr4:186634000-186642400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:186634400-186637200	Weak transcription	Right Atrium	heart
23	chr4:186634400-186637400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:186634400-186637400	Weak transcription	Lung	lung
25	chr4:186634400-186645200	Enhancers	Liver	Liver
26	chr4:186634400-186651800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr4:186634600-186635600	Enhancers	Duodenum Mucosa	Duodenum
28	chr4:186634600-186637400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:186634800-186637200	Weak transcription	Left Ventricle	heart
30	chr4:186634800-186637400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:186634800-186637400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:186634800-186640400	Weak transcription	Aorta	Aorta
33	chr4:186635000-186636000	Weak transcription	Stomach Mucosa	stomach
34	chr4:186635200-186638000	Enhancers	Fetal Heart	heart
35	chr4:186635400-186635600	Enhancers	Small Intestine	intestine
36	chr4:186635400-186635800	Enhancers	Gastric	stomach
37	chr4:186635400-186636400	Enhancers	HepG2	liver
38	chr4:186635400-186637800	Weak transcription	HUVEC	blood vessel
39	chr4:186635400-186639600	Weak transcription	Hela-S3	cervix

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