Variant report

Variant	rs35786770
Chromosome Location	chr2:234110032-234110033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr2:234109956-234110476	HL-60	blood:	n/a	n/a
2	POLR2A	chr2:234109744-234110530	GM12878	blood:	n/a	n/a
3	POLR2A	chr2:234109846-234110116	GM12878	blood:	n/a	n/a
4	POLR2A	chr2:234109936-234110427	GM12878	blood:	n/a	n/a
5	POLR2A	chr2:234109707-234112898	GM12878	blood:	n/a	n/a
6	POLR2A	chr2:234109739-234112728	GM12892	blood:	n/a	n/a
7	POLR2A	chr2:234109919-234110449	GM12891	blood:	n/a	n/a
8	POLR2A	chr2:234109633-234110592	GM12878	blood:	n/a	n/a
9	POLR2A	chr2:234109714-234112174	GM12891	blood:	n/a	n/a
10	POLR2A	chr2:234109708-234113789	NB4	blood:	n/a	n/a
11	MTA3	chr2:234110026-234110566	GM12878	blood:	n/a	n/a
12	POLR2A	chr2:234109842-234110108	GM12878	blood:	n/a	n/a
13	POLR2A	chr2:234109937-234110584	GM12892	blood:	n/a	n/a
14	POLR2A	chr2:234110015-234110434	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:234108742..234111363-chr2:234117940..234120302,2	K562	blood:
2	chr2:234107430..234110250-chr2:234115314..234117709,2	MCF-7	breast:

Variant related genes	Relation type
INPP5D	TF binding region
RN7SL32P	TF binding region
ENSG00000085978	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13032126	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527354	chr2:234093805-234118882	Strong transcription Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv584698	chr2:234107070-234118583	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234053800-234110800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr2:234053800-234113800	Strong transcription	Primary T cells from cord blood	blood
3	chr2:234053800-234118000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr2:234054400-234110600	Weak transcription	Small Intestine	intestine
5	chr2:234055200-234113400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:234074200-234111200	Weak transcription	Brain Substantia Nigra	brain
7	chr2:234074600-234122000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr2:234075200-234111800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr2:234075200-234117000	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr2:234075400-234111200	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr2:234075400-234113800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr2:234075400-234115200	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr2:234077200-234117200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:234089000-234111200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:234089000-234111400	Weak transcription	Fetal Muscle Leg	muscle
16	chr2:234089200-234111400	Weak transcription	Left Ventricle	heart
17	chr2:234089400-234111000	Strong transcription	Fetal Thymus	thymus
18	chr2:234090200-234113800	Strong transcription	Primary T helper naive cells from peripheral blood	blood
19	chr2:234091400-234111200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr2:234091800-234111200	Weak transcription	Stomach Smooth Muscle	stomach
21	chr2:234094000-234111400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:234095200-234110800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:234095200-234111200	Weak transcription	Brain Hippocampus Middle	brain
24	chr2:234095200-234111600	Weak transcription	Brain Anterior Caudate	brain
25	chr2:234099200-234111400	Weak transcription	Right Ventricle	heart
26	chr2:234099800-234116000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr2:234100200-234110400	Strong transcription	Primary B cells from cord blood	blood
28	chr2:234100400-234121800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr2:234101000-234116000	Weak transcription	HUVEC	blood vessel
30	chr2:234105800-234111000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr2:234106200-234110800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr2:234107000-234111000	Weak transcription	Fetal Intestine Small	intestine
33	chr2:234107200-234111400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr2:234107200-234111400	Weak transcription	HepG2	liver
35	chr2:234107200-234111600	Weak transcription	Colonic Mucosa	Colon
36	chr2:234107200-234115200	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr2:234107400-234111000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr2:234108200-234112400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
39	chr2:234108400-234110200	Strong transcription	Primary hematopoietic stem cells	blood
40	chr2:234108400-234110800	Genic enhancers	Monocytes-CD14+_RO01746	blood
41	chr2:234108400-234112200	Genic enhancers	GM12878-XiMat	blood
42	chr2:234108400-234116000	Strong transcription	HMEC	breast
43	chr2:234108600-234110400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr2:234108600-234110400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr2:234108600-234112600	Genic enhancers	Primary monocytes fromperipheralblood	blood
46	chr2:234108800-234112000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr2:234108800-234113600	Strong transcription	Dnd41	blood
48	chr2:234109000-234111000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr2:234109000-234111000	Strong transcription	Liver	Liver
50	chr2:234109200-234110400	Strong transcription	Placenta	Placenta

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