Variant report

Variant	rs35789176
Chromosome Location	chr8:4850802-4850803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12543423	1.00[ASN][1000 genomes]
rs12546021	1.00[ASN][1000 genomes]
rs12547604	1.00[ASN][1000 genomes]
rs13265122	0.87[AMR][1000 genomes]
rs13273361	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13274516	0.87[AMR][1000 genomes]
rs13275884	0.84[AMR][1000 genomes]
rs34178473	0.84[AMR][1000 genomes]
rs34415305	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34415424	0.83[EUR][1000 genomes]
rs3860871	1.00[ASN][1000 genomes]
rs3886806	1.00[ASN][1000 genomes]
rs3886808	1.00[ASN][1000 genomes]
rs73182813	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv609876	chr8:4494811-5092970	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1029480	chr8:4497596-5081032	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031026	chr8:4771072-5054326	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:4847200-4851400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr8:4848600-4851000	Active TSS	Brain Angular Gyrus	brain
3	chr8:4848600-4852600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
4	chr8:4848600-4852800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr8:4848600-4852800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
6	chr8:4848800-4851200	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
7	chr8:4848800-4852800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
8	chr8:4848800-4852800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr8:4849600-4852000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
10	chr8:4849800-4851000	Flanking Active TSS	Liver	Liver
11	chr8:4849800-4852000	Enhancers	Pancreas	Pancrea
12	chr8:4850000-4851400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
13	chr8:4850000-4852000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr8:4850000-4852200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr8:4850200-4851200	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
16	chr8:4850200-4852000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
17	chr8:4850400-4851000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
18	chr8:4850400-4851000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:4850400-4851000	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
20	chr8:4850400-4851000	Bivalent/Poised TSS	Fetal Heart	heart
21	chr8:4850400-4851000	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
22	chr8:4850400-4851200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:4850400-4851200	Bivalent Enhancer	Fetal Intestine Large	intestine
24	chr8:4850400-4851200	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
25	chr8:4850400-4851800	Bivalent Enhancer	Spleen	Spleen
26	chr8:4850400-4852000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:4850400-4852800	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr8:4850600-4851000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
29	chr8:4850600-4851000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr8:4850600-4851000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:4850600-4851000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:4850600-4851000	Bivalent/Poised TSS	Adipose Nuclei	Adipose
33	chr8:4850600-4851000	Active TSS	Brain Anterior Caudate	brain
34	chr8:4850600-4851000	Bivalent/Poised TSS	Right Ventricle	heart
35	chr8:4850600-4851000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
36	chr8:4850600-4851200	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
37	chr8:4850600-4851400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
38	chr8:4850600-4851400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
39	chr8:4850600-4851800	Active TSS	Esophagus	oesophagus
40	chr8:4850600-4851800	Bivalent Enhancer	Fetal Intestine Small	intestine
41	chr8:4850600-4852200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:4850600-4852600	Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr8:4850600-4852600	Bivalent/Poised TSS	Brain Substantia Nigra	brain
44	chr8:4850800-4851000	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
45	chr8:4850800-4851000	Bivalent Enhancer	Fetal Stomach	stomach
46	chr8:4850800-4851200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain

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