Variant report

Variant	rs35789272
Chromosome Location	chr2:38760174-38760175
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:38759515..38762169-chr2:38765133..38766792,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10164547	0.91[EUR][1000 genomes]
rs12105827	0.93[ASN][1000 genomes]
rs12993657	0.97[ASN][1000 genomes]
rs13003268	0.96[ASN][1000 genomes]
rs13008970	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13011825	0.97[ASN][1000 genomes]
rs13017981	0.96[ASN][1000 genomes]
rs13030122	0.91[EUR][1000 genomes]
rs17421378	0.84[ASN][1000 genomes]
rs17421399	0.93[ASN][1000 genomes]
rs17493321	0.91[ASN][1000 genomes]
rs34092964	0.80[EUR][1000 genomes]
rs34171322	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34218951	0.88[ASN][1000 genomes]
rs34311924	0.97[ASN][1000 genomes]
rs34355269	0.94[ASN][1000 genomes]
rs34655983	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35066504	0.97[ASN][1000 genomes]
rs35120096	0.96[ASN][1000 genomes]
rs35275207	0.96[ASN][1000 genomes]
rs35299812	0.89[ASN][1000 genomes]
rs35704960	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35803605	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3731843	0.96[ASN][1000 genomes]
rs72795132	0.97[ASN][1000 genomes]
rs7574556	0.88[ASN][1000 genomes]
rs7584009	0.90[ASN][1000 genomes]
rs7592090	0.97[ASN][1000 genomes]
rs7603200	0.96[ASN][1000 genomes]
rs7606253	0.97[ASN][1000 genomes]
rs7606376	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
2	nsv9646	chr2:38358311-39082189	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases
3	nsv873881	chr2:38745624-38877636	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:38751200-38762400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:38752200-38760200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:38755600-38760400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:38755600-38762800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:38755600-38763000	Weak transcription	Esophagus	oesophagus
6	chr2:38755600-38763000	Weak transcription	Pancreas	Pancrea
7	chr2:38756000-38760200	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:38756000-38760200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:38756000-38760400	Weak transcription	Adipose Nuclei	Adipose
10	chr2:38756000-38760400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:38756000-38760800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:38756000-38761400	Weak transcription	Brain Anterior Caudate	brain
13	chr2:38756000-38762800	Weak transcription	Right Atrium	heart
14	chr2:38756800-38762800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:38757000-38760200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:38759600-38763000	Enhancers	Primary B cells from peripheral blood	blood
17	chr2:38759600-38763000	Weak transcription	Brain Substantia Nigra	brain
18	chr2:38759800-38760400	Active TSS	Stomach Smooth Muscle	stomach
19	chr2:38759800-38761600	Enhancers	Primary B cells from cord blood	blood
20	chr2:38759800-38763000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr2:38760000-38760600	Enhancers	GM12878-XiMat	blood
22	chr2:38760000-38760800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:38760000-38761000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr2:38760000-38761000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr2:38760000-38761000	Flanking Bivalent TSS/Enh	HepG2	liver
26	chr2:38760000-38761000	Enhancers	Monocytes-CD14+_RO01746	blood

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