Variant report

Variant	rs35789439
Chromosome Location	chr10:95714351-95714352
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11815169	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12570608	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12571030	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571819	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12573551	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12768993	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758529	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95703200-95721800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr10:95707400-95722800	Weak transcription	Fetal Stomach	stomach
3	chr10:95707800-95725600	Weak transcription	Ovary	ovary
4	chr10:95708000-95714800	Weak transcription	HSMMtube	muscle
5	chr10:95708400-95720800	Weak transcription	Fetal Muscle Leg	muscle
6	chr10:95709400-95715000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:95711800-95718600	Weak transcription	Fetal Intestine Small	intestine
8	chr10:95712200-95725600	Weak transcription	Spleen	Spleen
9	chr10:95713200-95715200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:95713200-95715800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:95713400-95715200	Enhancers	NHEK	skin
12	chr10:95713600-95714600	Weak transcription	HMEC	breast
13	chr10:95713600-95715400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:95713800-95715000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:95713800-95715200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:95714000-95714800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr10:95714000-95715000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:95714000-95715200	Enhancers	NHDF-Ad	bronchial
19	chr10:95714000-95715200	Enhancers	Osteobl	bone
20	chr10:95714000-95715400	Enhancers	HSMM	muscle
21	chr10:95714000-95715800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:95714200-95715000	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links