Variant report

Variant	rs35794830
Chromosome Location	chr3:43690755-43690756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:43680304..43682151-chr3:43689977..43692168,2	K562	blood:
2	chr3:43683058..43686168-chr3:43689505..43691557,3	K562	blood:
3	chr3:43680997..43684458-chr3:43685498..43690929,5	K562	blood:
4	chr3:43689355..43690941-chr3:43693998..43697008,3	K562	blood:
5	chr3:43597398..43599637-chr3:43690273..43692203,2	K562	blood:
6	chr3:43598137..43600828-chr3:43690273..43693034,2	K562	blood:
7	chr3:43689764..43692550-chr3:43731279..43734101,2	K562	blood:
8	chr3:43689583..43692223-chr3:43727679..43730041,2	K562	blood:
9	chr3:43677109..43678918-chr3:43689320..43690947,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000160746	Chromatin interaction
ENSG00000011198	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13082460	1.00[AMR][1000 genomes]
rs35358711	1.00[AMR][1000 genomes]
rs71325003	1.00[AMR][1000 genomes]
rs71616101	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834673	chr3:43622985-43799876	Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43680800-43691200	Weak transcription	Colonic Mucosa	Colon
2	chr3:43680800-43691200	Weak transcription	Placenta	Placenta
3	chr3:43683800-43691000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:43683800-43691000	Weak transcription	Osteobl	bone
5	chr3:43688000-43691000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr3:43688200-43691000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:43688400-43691000	Enhancers	Fetal Intestine Small	intestine
8	chr3:43689000-43691200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:43689200-43691000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:43689200-43691000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:43689200-43691000	Weak transcription	HepG2	liver
12	chr3:43689400-43690800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr3:43689400-43691200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr3:43689600-43690800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr3:43689600-43690800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:43689600-43691000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:43689600-43691000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:43689600-43691000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr3:43689600-43691000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:43689600-43691200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr3:43689800-43690800	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr3:43689800-43691000	Weak transcription	Fetal Intestine Large	intestine
23	chr3:43689800-43691000	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr3:43690000-43690800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr3:43690200-43691000	Weak transcription	Adipose Nuclei	Adipose
26	chr3:43690400-43690800	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr3:43690400-43690800	Enhancers	K562	blood
28	chr3:43690600-43690800	Enhancers	Skeletal Muscle Male	skeletal muscle

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