Variant report

Variant	rs35800443
Chromosome Location	chr15:52526872-52526873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:52526628..52528365-chr15:52537492..52540150,2	MCF-7	breast:
2	chr15:52521390..52524844-chr15:52525282..52528513,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12915773	0.82[EUR][1000 genomes]
rs17650541	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34174146	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34270279	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3825801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs71472932	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71472935	0.81[AMR][1000 genomes]
rs8042385	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054372	chr15:52369078-52579464	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv542387	chr15:52369078-52579464	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv833005	chr15:52389869-52541330	Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	esv1851383	chr15:52501831-52534344	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv1846455	chr15:52501831-52714452	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv1537	chr15:52502246-52537067	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52479800-52532800	Weak transcription	Brain Angular Gyrus	brain
2	chr15:52497400-52535600	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr15:52497800-52549000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:52501600-52532600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr15:52501800-52528000	Weak transcription	Fetal Heart	heart
6	chr15:52505600-52549200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:52506400-52548800	Weak transcription	Fetal Kidney	kidney
8	chr15:52509400-52537200	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr15:52512800-52534000	Weak transcription	Colonic Mucosa	Colon
10	chr15:52514000-52539400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:52516000-52549400	Weak transcription	Left Ventricle	heart
12	chr15:52516800-52528200	Weak transcription	Spleen	Spleen
13	chr15:52517400-52527000	Weak transcription	Brain Anterior Caudate	brain
14	chr15:52519000-52527000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:52519000-52528200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr15:52520200-52533800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:52521600-52530400	Weak transcription	Fetal Intestine Large	intestine
18	chr15:52521600-52531400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr15:52522400-52531400	Weak transcription	Stomach Mucosa	stomach
20	chr15:52523400-52528600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr15:52523400-52530000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:52523400-52530400	Strong transcription	HepG2	liver
23	chr15:52523400-52532400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:52523400-52532600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:52523400-52548600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:52523600-52530000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr15:52523800-52527000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr15:52523800-52527200	Enhancers	Primary T cells from cord blood	blood
29	chr15:52523800-52528600	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr15:52523800-52528600	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr15:52523800-52530000	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr15:52524000-52528000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:52524400-52579400	Weak transcription	Small Intestine	intestine
34	chr15:52524600-52528600	Enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr15:52524600-52530000	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr15:52525000-52527000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:52525000-52527000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr15:52525200-52532200	Strong transcription	Cortex derived primary cultured neurospheres	brain
39	chr15:52525400-52528000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr15:52525400-52528600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr15:52525600-52527200	Genic enhancers	Rectal Mucosa Donor 31	rectum
42	chr15:52525600-52527200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
43	chr15:52525600-52527400	Strong transcription	Fetal Stomach	stomach
44	chr15:52525600-52528200	Enhancers	Primary T killer memory cells from peripheral blood	blood
45	chr15:52525600-52528200	Enhancers	Thymus	Thymus
46	chr15:52525600-52528400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:52525600-52528600	Enhancers	Primary T cells fromperipheralblood	blood
48	chr15:52525600-52528600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:52525600-52528600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr15:52525600-52528600	Enhancers	Fetal Thymus	thymus

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