Variant report

Variant	rs35801270
Chromosome Location	chr14:33223934-33223935
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10143512	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12890485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17091663	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2300839	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2300840	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2300843	0.88[ASN][1000 genomes]
rs35654417	0.96[ASN][1000 genomes]
rs977966	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv832765	chr14:33188170-33367348	Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33194600-33225600	Weak transcription	Aorta	Aorta
2	chr14:33202600-33228800	Weak transcription	Brain Angular Gyrus	brain
3	chr14:33205200-33254600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:33206400-33225000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:33207600-33224800	Weak transcription	Left Ventricle	heart
6	chr14:33207600-33225800	Weak transcription	HSMMtube	muscle
7	chr14:33208200-33225800	Weak transcription	Fetal Heart	heart
8	chr14:33214600-33225400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr14:33215600-33225200	Weak transcription	Right Ventricle	heart
10	chr14:33216000-33225600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:33222400-33225200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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