Variant report

Variant	rs35806428
Chromosome Location	chr11:102248950-102248951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:102247932..102250418-chr11:102321607..102323782,2	K562	blood:
2	chr11:102247349..102249796-chr11:102259275..102261867,2	K562	blood:
3	chr11:102246464..102249796-chr11:102259406..102262797,3	K562	blood:
4	chr11:102217499..102220064-chr11:102248681..102250853,2	K562	blood:
5	chr11:102248264..102252607-chr11:102254187..102258026,4	K562	blood:
6	chr11:102247498..102250986-chr11:102255222..102258637,4	K562	blood:

Variant related genes	Relation type
ENSG00000110330	Chromatin interaction
ENSG00000152558	Chromatin interaction
ENSG00000255337	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7927794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7945513	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052348	chr11:101987090-102255753	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050961	chr11:101993880-102253717	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1051735	chr11:101993880-102255753	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv3514195	chr11:102118479-102348362	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv3514197	chr11:102118479-102348362	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102220000-102283000	Weak transcription	Hela-S3	cervix
2	chr11:102225600-102255400	Weak transcription	Fetal Heart	heart
3	chr11:102232400-102259600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:102232600-102255000	Weak transcription	Right Atrium	heart
5	chr11:102235600-102255000	Weak transcription	Right Ventricle	heart
6	chr11:102235800-102259600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:102236600-102249800	Weak transcription	Psoas Muscle	Psoas
8	chr11:102236600-102249800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:102237000-102249600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:102237000-102255400	Weak transcription	Aorta	Aorta
11	chr11:102237000-102263800	Weak transcription	Small Intestine	intestine
12	chr11:102237200-102249200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:102237200-102249600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr11:102237600-102249600	Weak transcription	Colonic Mucosa	Colon
15	chr11:102239600-102249600	Weak transcription	Brain Hippocampus Middle	brain
16	chr11:102239600-102249600	Weak transcription	Ovary	ovary
17	chr11:102239600-102250200	Weak transcription	Fetal Kidney	kidney
18	chr11:102239600-102259000	Weak transcription	Fetal Brain Male	brain
19	chr11:102239800-102249600	Weak transcription	Brain Germinal Matrix	brain
20	chr11:102239800-102249600	Weak transcription	HSMMtube	muscle
21	chr11:102239800-102250000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:102239800-102250000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:102239800-102254600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:102240000-102250200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr11:102245400-102278000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:102245600-102252200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr11:102245600-102252600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:102245600-102252800	Strong transcription	Duodenum Mucosa	Duodenum
29	chr11:102245600-102253000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:102245600-102253800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr11:102245600-102255200	Strong transcription	Placenta	Placenta
32	chr11:102245600-102256600	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr11:102245600-102258600	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr11:102245600-102266200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:102245600-102275600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:102245800-102252600	Strong transcription	Fetal Lung	lung
37	chr11:102245800-102257200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:102245800-102260400	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr11:102245800-102260800	Strong transcription	HSMM	muscle
40	chr11:102245800-102275000	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr11:102246000-102249600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:102246000-102253200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:102246000-102253800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:102246000-102255000	Weak transcription	Lung	lung
45	chr11:102246000-102255200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:102246000-102255800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:102246000-102261800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr11:102246000-102278400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr11:102246200-102249000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:102246200-102249200	Weak transcription	Dnd41	blood

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